SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78783

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene78783
CCATGGGAACTCTCGGAGGTTTACGCGATGTGAAAGATTTTCAGATCGCGTAAACCTCCGAGAGTTCCCATGGCCGCTACCGTTGATGAACACAACAAGCAGCAGAATGGCGATGTATCGTTTCGTCGAGTGGTGGCGGCAAAGGAGCAAGTTGTAGCGGGGACTATGTATCATCTGACCATAGAGCCGAGGACGGCG

Ace file of the UniGene sp_v3.0_unigene78783

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cystatin n=4 Tax=Arachis RepID=B3GR01_9FABA	-	-	7.0e-07	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Cysteine proteinase inhibitor	-	-	1.162e-16	-

Source	Gene names
Sma3	BCPI-2; CI1; CPI-1; HBMYCPI; POPTRDRAFT_593697; POPTRDRAFT_639787; POPTRDRAFT_711772; RCOM_0621400; ci1;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	cysteine-type endopeptidase inhibitor activity	GO:0004869	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteinase inhibitor I25, cystatin	IPR000010	-	0.0	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40880.1	FL3-27, ATCYSA, CYSA cystatin A chr2:17057463-17057930 FORWARD LENGTH=125	4.0e-11	62%
RefSeq	Arabidopsis thaliana	NP_181620.1	cysteine proteinase inhibitor 3 [Arabidopsis thaliana]	5.0e-11	62%
RefSeq	Populus trichocarpa	XP_002336760.1	predicted protein [Populus trichocarpa]	4.0e-11	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMW5

Fln msg: Separated hits, possible frame ERROR between 44 and 82, Distance to subject end: 133 aas, your sequence is shorter than subject: 66 - 231

Fln protein: MGTLGGLRDVKDFxxxxxxxxxxxxxxVDEHNKQQNGDVSFRRVVAAKEQVVAGTMYHLTIEPRTA

Protein Length: 67

Fln nts: CCATGGGAACTCTCGGAGGTTTACGCGATGTGAAAGATTTTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGTTGATGAACACAACAAGCAGCAGAATGGCGATGTATCGTTTCGTCGAGTGGTGGCGGCAAAGGAGCAAGTTGTAGCGGGGACTATGTATCATCTGACCATAGAGCCGAGGACGGCG

Fln Alignment:

GD4IA4403GA978___MGTLGGLRDVKDFQxxxxxxxxxxxxxVDEHNKQQNGDVSFRRVVAAKEQVVAGTMYHLTIE
B8LMW5_______________MGTLGGLRDVKDFQxxxxxxxxxxxxxVDEHNKQQNGDISFRRVVAAQEQVVAGTMYHLTIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain