SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78771

Length: 276 nt

UniGene Fasta

>sp_v3.0_unigene78771
ACTGGGTCCGCTAATTTATTCTTGGGGAGCAACAACTCGGTACCACCCCTCAGGCTGAGAAATTCCTTGCGATCTACAATTCCCTGGACGTGCTCTGAAATGGCGCCGTTTGCAAAGAGATCAAAGCAATCCTCGAATGCTGTAATTATGGGAGAGGCCTTGGTCTCCGAGGAGAACGATCTTGTTGTACCCAACGATCAATTCAGCCAACAGGCCTTGGTTTCTTCTCTCCAACAGTATCTTGATATGTACAAAAGATCTATCCAGGATCCAGCT

Ace file of the UniGene sp_v3.0_unigene78771

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetyl-CoA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGS6_RICCO	-	-	7.0e-12	72%
FL-Next	Isoform 2 of Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
Sma3	Acetate--CoA ligase.	EC:6.2.1.1	-	1.88e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.88e-08	%
Sma3	Pyruvate metabolism	00620	1.88e-08	%
Sma3	Propanoate metabolism	00640	1.88e-08	%
Sma3	Methane metabolism	00680	1.88e-08	%
Sma3	Carbon fixation pathways in prokaryotes	00720	1.88e-08	%
Sma3	Metabolic pathways	01100	1.88e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.88e-08	%

Source	Gene names
Sma3	At5g36880; POPTRDRAFT_572831; RCOM_1443610; VITISV_019712;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	acetate-CoA ligase activity	GO:0003987	Molecular Function	-
Sma3	AMP binding	GO:0016208	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Acetate-CoA ligase	IPR011904	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G36880.2	ACS acetyl-CoA synthetase chr5:14534961-14540296 REVERSE LENGTH=743	2.0e-14	68%
RefSeq	Arabidopsis thaliana	NP_198504.1	acetyl-CoA synthetase [Arabidopsis thaliana]	2.0e-14	68%
RefSeq	Populus trichocarpa	XP_002320403.1	predicted protein [Populus trichocarpa]	2.0e-15	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: B9DGD6-2

Fln msg: Distance to subject end: 621 aas, your sequence is shorter than subject: 59 - 693

Fln protein: MAPFAKRSKQSSNAVIMGEALVSEENDLVVPNDQFSQQALVSSLQQYLDMYKRSIQDPA

Protein Length: 60

Fln nts: ACTGGGTCCGCTAATTTATTCTTGGGGAGCAACAACTCGGTACCACCCCTCAGGCTGAGAAATTCCTTGCGATCTACAATTCCCTGGACGTGCTCTGAA_-_ATGGCGCCGTTTGCAAAGAGATCAAAGCAATCCTCGAATGCTGTAATTATGGGAGAGGCCTTGGTCTCCGAGGAGAACGATCTTGTTGTACCCAACGATCAATTCAGCCAACAGGCCTTGGTTTCTTCTCTCCAACAGTATCTTGATATGTACAAAAGATCTATCCAGGATCCAGCT

Fln Alignment:

GD4IA4403FSWTG___NAVIMGEALVSEENDLVVPNDQFSQQALVSSLQQYLDMYKRSIQDPA
B9DGD6-2_____________NAVVLGESLASEENDLVFPSKEFSGQALVSSPQQYMEMHKRSMDDPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain