SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78688

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene78688
CCCGAAACCCTTAAGTGCGAGGAAGGGTTTCGGGTGATTTCGAAGATTGCTCCCCATCTGGACCGCCATCTTGTTTTCCCACTTCTGGAGTTTCTGCAGGAGAAACAGCTCTATCCGGACGAACAAATTCTCAAGTCGAAGATCGACCTTCTCAGCAAAACCAACATGGTCGACTACGCCATGGACATCC

Ace file of the UniGene sp_v3.0_unigene78688

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor eIF-3 subunit 6 [Arabidopsis thaliana] gb\|AAG53613.1\|AF285832_1 eukaryotic initiation factor 3E subunit [Arabidopsis thaliana] gb\|AAK64017.1\| putative translation initiation factor 3 [Arabidopsis thaliana] gb\|AAL85088.1\| puta	-	-	1.0e-16	71%
FL-Next	sp=Eukaryotic translation initiation factor 3 subunit E; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	At3g57290; F28O9.140; GSVIVT00025658001; MICPUCDRAFT_26784; MICPUN_108491; OJ1641_C04.124-1; OJ1641_C04.124-2; Os07g0167000; Os07g0222300; OsI_25031; OsI_25391; OsJ_23219; OsJ_23573; P0592C06.125; PHYPADRAFT_106353; PHYPADRAFT_199296; POPTRDRAFT_576239; P

Source	GOs	Term	Type	Identity
Sma3	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	signalosome	GO:0008180	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription initiation, DNA-dependent	GO:0006352	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Translation initiation factor 3, subunit 6, eukaryotic	IPR016650	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57290.1	EIF3E, TIF3E1, ATEIF3E-1, INT-6, ATINT6, INT6 eukaryotic translation initiation factor 3E chr3:21196786-21199073 REVERSE LENGTH=441	4.0e-22	71%
RefSeq	Arabidopsis thaliana	NP_567047.1	translation initiation factor eIF-3 subunit 6 [Arabidopsis thaliana]	5.0e-22	71%
RefSeq	Populus trichocarpa	XP_002308015.1	predicted protein [Populus trichocarpa]	2.0e-23	87%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLS1

Fln msg: Distance to subject end: 352 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 63 - 409

Fln protein: PETLKCEEGFRVISKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDI

Protein Length: 64

Fln nts: CCCGAAACCCTTAAGTGCGAGGAAGGGTTTCGGGTGATTTCGAAGATTGCTCCCCATCTGGACCGCCATCTTGTTTTCCCACTTCTGGAGTTTCTGCAGGAGAAACAGCTCTATCCGGACGAACAAATTCTCAAGTCGAAGATCGACCTTCTCAGCAAAACCAACATGGTCGACTACGCCATGGACATCC

Fln Alignment:

GD4IA4403FYP4D___FRVISKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDI
B8LLS1_______________YDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDDQILKSKIDLLSKTNMVDYAMDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain