SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78623

Length: 150 nt

UniGene Fasta

>sp_v3.0_unigene78623
CAGTAACTCCAGTCCCACAAGACGCAACTACTGGATAATTCAGTGAAATGCCTTCTTGTGGGACTGGAGTTACTGCATGTATTCTTGCACTGGGTCTTCATCGCCTTGGTAAGTGTGACGTTGCTGTCTATGATGGCTCTTGGACAGAAT

Ace file of the UniGene sp_v3.0_unigene78623

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thiosulfate sulfurtransferase n=1 Tax=Datisca glomerata RepID=Q9ZPK0_DATGL	-	-	1.0e-10	96%
FL-Next	sp=Sulfurtransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Thiosulfate transferase	-	-	8.801e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Thiosulfate sulfurtransferase.	EC:2.8.1.1	-	8.799e-08	-
Sma3	3-mercaptopyruvate sulfurtransferase.	EC:2.8.1.2	-	8.191e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cysteine and methionine metabolism	00270		8.191e-12	%
Sma3	Metabolic pathways	01100		8.191e-12	%

Source	Gene names
Sma3	At1g16460; At1g79230; At1g79230/YUP8H12R_39; Atmst1; Atmst2; B77C13.7; F3O9.26; GSVIVT00035687001; LOC_Os12g41500; MST1; MST2; Mst1; OSJNBa0085K21.31; Os02g0167100; Os12g0608600; OsI_05995; OsI_39053; OsJ_05521; OsJ_36817; Ot15g00100; PHYPADRAFT_212228; P

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thiosulfate sulfurtransferase activity	GO:0004792	Molecular Function	-
Sma3	3-mercaptopyruvate sulfurtransferase activity	GO:0016784	Molecular Function	-
Sma3	sulfate transport	GO:0008272	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Thiosulphate sulfurtransferase, conserved site	IPR001307	-	-
Sma3	Rhodanese-like	IPR001763	-	-
Sma3	Biotin/lipoate A/B protein ligase	IPR004143	-	-
Sma3	Biotin--acetyl-CoA-carboxylase ligase	IPR004408	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79230.1	ST1, ATMST1, MST1, ATRDH1, STR1 mercaptopyruvate sulfurtransferase 1 chr1:29800824-29803679 FORWARD LENGTH=379	6.0e-15	85%
RefSeq	Arabidopsis thaliana	NP_001077847.1	thiosulfate sulfurtransferase [Arabidopsis thaliana]	3.0e-15	85%
RefSeq	Populus trichocarpa	XP_002310670.1	predicted protein [Populus trichocarpa]	2.0e-15	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWI8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 16 aas, your sequence is shorter than subject: 49 - 396

Fln protein: VTPVPQDATTG*FSEMPSCGTGVTACILALGLHRLGKCDVAVYDGSWTE

Protein Length: 50

Fln nts: CAGTAACTCCAGTCCCACAAGACGCAACTACTGGATAATTCAGTGAAATGCCTTCTTGTGGGACTGGAGTTACTGCATGTATTCTTGCACTGGGTCTTCATCGCCTTGGTAAGTGTGACGTTGCTGTCTATGATGGCTCTTGGACAGAAT

Fln Alignment:

GD4IA4403GMS74___SCGTGVTACILALGLHRLGKCDVAVYDGSWTE
A9NWI8_______________SCGTGVTACILALGLHRLGKSDVAVYDGSWTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain