SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78595

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene78595
AATGCAAAATTCTTTCATAATCCACTGAATAATTGGTACCAAATATTCAGTGCCCCAGGTGATTTTTTTGAACAGCCTGTTTGGCTATCTTTCACTCCTCATAATCATTAAGTGGTGCACTGGTTCCCAAGCTGATCTTTATCATGTCATGATATATATGTTCTTAAGCCCAACTGATGAACTTG

Ace file of the UniGene sp_v3.0_unigene78595

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative proton pump n=1 Tax=Oryza sativa RepID=Q8SAZ7_ORYSA	-	-	3.0e-19	91%
FL-Next	tr=V-type proton ATPase 116 kDa subunit a isoform; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	97%
Sma3	Vacuolar proton atpase, putative	-	-	1.216e-12	-

Source	Gene names
Sma3	AT4g39080; ATPvA2; ATPvA3; At2g21410; At2g28520; At4g39080; CHLREDRAFT_115936; CHLREDRAFT_131895; CHLREDRAFT_438; CM0216.490.nc; F19H22.180; GSVIVT00014511001; GSVIVT00024467001; GSVIVT00035934001; LOC_Os03g14690; LOC_Os10g10500; MICPUCDRAFT_16972; MICPUN

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	trans-Golgi network transport vesicle membrane	GO:0012510	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28520.1	VHA-A1 vacuolar proton ATPase A1 chr2:12210026-12215532 FORWARD LENGTH=817	5.0e-23	93%
RefSeq	Arabidopsis thaliana	NP_850122.1	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana]	7.0e-23	93%
RefSeq	Populus trichocarpa	XP_002306128.1	predicted protein [Populus trichocarpa]	2.0e-23	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7IU50

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 199 aas, your sequence is shorter than subject: 61 - 824

Fln protein: MQNSFIIH*IIGTKYSVPQVIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDEL

Protein Length: 62

Fln nts: AATGCAAAATTCTTTCATAATCCACTGAATAATTGGTACCAAATATTCAGTGCCCCAGGTGATTTTTTTGAACAGCCTGTTTGGCTATCTTTCACTCCTCATAATCATTAAGTGGTGCACTGGTTCCCAAGCTGATCTTTATCATGTCATGATATATATGTTCTTAAGCCCAACTGATGAACTTG

Fln Alignment:

GD4IA4403HC0NM___VPQVIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDEL
G7IU50_______________VPQMIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain