SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78593

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene78593
TTCCACAGCAGTGATCAACCATTACAAGTACCAGGCATGGAGTGAATTCAAATCCAAGTTCAGGAGGAGGGTGTCTGCCTATGTAGTGGATTGGAAAGAGTCGAGGAATCCGAGTTCTCGGGACAGGACACCAGGACTGGGGAATCGGGGCAGTAGAACCTCCAGAGTGGGAGAACAAGTTCTGT

Ace file of the UniGene sp_v3.0_unigene78593

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Ubiquitin-protein ligase, putative	-	-	4.979e-06	-

Source	Gene names
Sma3	AT4g37420; At1g27200; At4g37420; At5g40720; F6G17.70; GSVIVT00002888001; GSVIVT00020580001; GSVIVT00028930001; Os06g0727900; OsI_03792; OsJ_22727; P0017G10.29; PHYPADRAFT_151210; PHYPADRAFT_59338; POPTRDRAFT_206728; POPTRDRAFT_565215; RCOM_0530710; RCOM_0

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	0.0	-
Sma3	Domain of unknown function DUF23	IPR008166	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G37420.1	Domain of unknown function (DUF23) chr4:17593123-17594889 FORWARD LENGTH=588	6.0e-20	78%
RefSeq	Arabidopsis thaliana	NP_195458.1	uncharacterized protein [Arabidopsis thaliana]	8.0e-20	78%
RefSeq	Populus trichocarpa	XP_002306978.1	predicted protein, partial [Populus trichocarpa]	2.0e-20	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLQ9

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 61 - 595

Fln protein: STAVINHYKYQAWSEFKSKFRRRVSAYVVDWKESRNPSSRDRTPGLGNRGSRTSRVGEQVL

Protein Length: 62

Fln nts: TTCCACAGCAGTGATCAACCATTACAAGTACCAGGCATGGAGTGAATTCAAATCCAAGTTCAGGAGGAGGGTGTCTGCCTATGTAGTGGATTGGAAAGAGTCGAGGAATCCGAGTTCTCGGGACAGGACACCAGGACTGGGGAATCGGGGCAGTAGAACCTCCAGAGTGGGAGAACAAGTTCTGT

Fln Alignment:

GD4IA4403GOC9C___STAVINHYKYQAWSEFKSKFRRRVSAYVVDWKESRNPSSRDRTPGLGN
B8LLQ9_______________SEAVINHYKYQAWSEFKAKFRRRVSAYVADWKDSKNLSSRDRVPGLGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain