SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78555

Length: 101 nt

UniGene Fasta

>sp_v3.0_unigene78555
GCCAGAAACGGAACCGCGAACCTAGATTTGCTTTCATGACCAAAAGCGATATCGATCATCTTGAAGATGGCTATCGCTGGCGCAAATATGGCCAAAAAGCA

Ace file of the UniGene sp_v3.0_unigene78555

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WRKY transcription factor [Populus tremula x Populus alba]	-	-	2.0e-11	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	WRKY transcription factor, putative	-	-	1.352e-07	-

Source	Gene names
Sma3	At1g29860; At1g69310; At2g47260; At4g18170; At5g49520; F15J5.1; GSVIVT00030063001; GSVIVT00033165001; K6M13.6; LOC_Os03g55080; MA4_25J11.46; OJ1123_C12.118; OJ1651_G11.15; OJ1781_H11.1; OSJNBa0040E01.4; OSJNBb0035N21.12; Os01g0626400; Os01g0665500; Os03g0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Transcription factor, WRKY group IIc	IPR017396	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69310.1	WRKY57, ATWRKY57 WRKY DNA-binding protein 57 chr1:26056118-26057909 REVERSE LENGTH=287	1.0e-15	87%
RefSeq	Arabidopsis thaliana	NP_974112.1	putative WRKY transcription factor 57 [Arabidopsis thaliana]	2.0e-15	87%
RefSeq	Populus trichocarpa	XP_002320967.1	predicted protein [Populus trichocarpa]	6.0e-17	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ05

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 33 - 324

Fln protein: QKRNREPRFAFMTKSDIDHLEDGYRWRKYGQKA

Protein Length: 34

Fln nts: GCCAGAAACGGAACCGCGAACCTAGATTTGCTTTCATGACCAAAAGCGATATCGATCATCTTGAAGATGGCTATCGCTGGCGCAAATATGGCCAAAAAGCA

Fln Alignment:

GD4IA4403F0Y0L___QKRNREPRFAFMTKSDIDHLEDGYRWRKYGQKA
A9NZ05_______________EKRIRRPRYAFQTRSQVDILDDGYRWRKYGQKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain