SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78457

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene78457
CTTTGGGAATTTATCGAGGCTAAAAACACATCGACCTCTCTGAATGCCGTGCCTTAGAGAGGCTTCCCGACTCCTTCGGGAATTTATCCAGGCTAGAACATATCAACCTCTCTAAATGCCATGCCTTGAAGAGGCTTCCCGACTCCTTCGGGAATTTATCGAGGCTAGAACACATCAACCTCTTTAGATGCTATCGCCTTGGAGAGGCTTCCTGACTCCTTC

Ace file of the UniGene sp_v3.0_unigene78457

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	5.0e-16	69%
FL-Next	tr=Putative truncated TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04220.1	Disease resistance protein (TIR-NBS-LRR class) family chr3:1109118-1112188 REVERSE LENGTH=867	6.0e-12	45%
RefSeq	Arabidopsis thaliana	NP_187072.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	8.0e-12	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E9NZS7

Fln msg: your sequence is shorter than subject: 71 - 815

Fln protein: LGIYRG*KHIDLSECRALERLPDSFGNLSRLEHINLSKCHALKRLPDSFGNLSRLEHINLFRCYRLGEAS*

Protein Length: 72

Fln nts: CTTTGGGAATTTATCGAGGCTAAAAACACATCGACCTCTCTGAATGCCGTGCCTTAGAGAGGCTTCCCGACTCCTTCGGGAATTTATCCAGGCTAGAACATATCAACCTCTCTAAATGCCATGCCTTGAAGAGGCTTCCCGACTCCTTCGGGAATTTATCGAGGCTAGAACACATCAACCTCTTTAGATGCTATCGCCTTGGAGAGGCTTCCTGA___CTCCTTC

Fln Alignment:

GD4IA4403F4RUF___RG*KHIDLSECRALERLPDSFGNLSRLEHINLSKCHALKRLPDSFGNLSRLEHINLFRCYRL
E9NZS7_______________RSLKHLVL-RLTNLSSLPDSFGNLSRLEHINLYCCSQLERLPDSFGNLSRLEHIKLSRCSQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain