SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78439

Length: 260 nt

UniGene Fasta

>sp_v3.0_unigene78439
ACTCAATCAACATCTCATCTTCTTTGAAGAAACCGCTACCACCTCTTTCACCTCTTTCAGCGCAACTTACGAGGCTTTTCTCACATGGCGGATCAACTGTCTGAAGAACAGATCTCTGAATTCAAGGAGGCTTTCTCTCTGTTTGACAAAGATGGTGATGGCACGATCACGACCAAAGAGCTCGGCACTGTGATGCGCTCACTGGGTCAGAACCCGACTGAAGCCGAACTACAAGATATGATCAATGAGGTCGACGCTGA

Ace file of the UniGene sp_v3.0_unigene78439

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin, putative n=1 Tax=Schistosoma mansoni RepID=C4Q4E8_SCHMA	-	-	2.0e-24	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Calmodulin	-	-	2.76e-33	-

Source	Gene names
Sma3	At1g66410; At2g27030; At2g41110; At3g43810; At3g56800; At5g21274; At5g37780; CAL1; CALM1; CAM; CAM-1; CAM-11; CAM-16; CAM-2; CAM1; CAM1-1; CAM1-2; CAM1-3; CAM2; CAM3; CAM4; CAM5; CAM53; CAM6; CAM7; CAM72; CAM81; CAMF-1; CAMF1; CCM1; CHLREDRAFT_188144; CMD

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21274.1	CAM6, ACAM-6 calmodulin 6 chr5:7214740-7215950 REVERSE LENGTH=149	2.0e-31	93%
RefSeq	Arabidopsis thaliana	NP_176814.1	calmodulin 4 [Arabidopsis thaliana]	8.0e-32	94%
RefSeq	Populus trichocarpa	XP_002330977.1	predicted protein [Populus trichocarpa]	8.0e-32	94%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ02

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 58 - 154

Fln protein: MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA

Protein Length: 59

Fln nts: ACTCAATCAACATCTCATCTTCTTTGAAGAAACCGCTACCACCTCTTTCACCTCTTTCAGCGCAACTTACGAGGCTTTTCTCAC_-_ATGGCGGATCAACTGTCTGAAGAACAGATCTCTGAATTCAAGGAGGCTTTCTCTCTGTTTGACAAAGATGGTGATGGCACGATCACGACCAAAGAGCTCGGCACTGTGATGCGCTCACTGGGTCAGAACCCGACTGAAGCCGAACTACAAGATATGATCAATGAGGTCGACGCTGA

Fln Alignment:

GD4IA4403HGRHS___SHMADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA
A9NQ02_______________SRIVEQLTEEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain