|
||||||
|
UniGene Name: sp_v3.0_unigene78428
Length: 233 nt
 UniGene Fasta
|
|---|
| >sp_v3.0_unigene78428
G |
|
Ace file of the UniGene sp_v3.0_unigene78428
|
|---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
| Annotations |
|---|
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Ribulose bisphosphate carboxylase small chain n=1 Tax=Picea sitchensis RepID=A9NXP2_PICSI | - | - | 4.0e-29 | 91% |
| FL-Next | sp=Ribulose bisphosphate carboxylase small chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 91% |
| Sma3 | Ribulose bisphosphate carboxylase small chain | - | - | 0.0 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Ribulose-bisphosphate carboxylase. | EC:4.1.1.39 | - | 7.918e-23 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Glyoxylate and dicarboxylate metabolism | 00630 | 7.918e-23 | % | |
| Sma3 | Carbon fixation in photosynthetic organisms | 00710 | 7.918e-23 | % | |
| Sma3 | Metabolic pathways | 01100 | 7.918e-23 | % |
| Source | Gene names |
|---|---|
| Sma3 | ATS1A; ATS1B; ATS2B; ATS3B; At1g67090; At5g38410; At5g38420; At5g38430; GSVIVT00031354001; LOC_Os12g19394; LOC_Os12g19470; MXI10.14; MXI10.15; OSJNBa0050G13.33; Os02g0152400; Os12g0291100; Os12g0291400; Os12g0292400; OsI_018348; OsI_05882; OsI_38042; OsI_ |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast thylakoid membrane | GO:0009535 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast stroma | GO:0009570 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast ribulose bisphosphate carboxylase complex | GO:0009573 | Cellular Component | 0.0 | - |
| Sma3 | thylakoid | GO:0009579 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | cytosolic ribosome | GO:0022626 | Cellular Component | 0.0 | - |
| Sma3 | thylakoid lumen | GO:0031977 | Cellular Component | 0.0 | - |
| Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
| Sma3 | monooxygenase activity | GO:0004497 | Molecular Function | 0.0 | - |
| Sma3 | copper ion binding | GO:0005507 | Molecular Function | 0.0 | - |
| Sma3 | ribulose-bisphosphate carboxylase activity | GO:0016984 | Molecular Function | 0.0 | - |
| Sma3 | photorespiration | GO:0009853 | Biological Process | 0.0 | - |
| Sma3 | carbon fixation | GO:0015977 | Biological Process | 0.0 | - |
| Sma3 | reductive pentose-phosphate cycle | GO:0019253 | Biological Process | 0.0 | - |
| Sma3 | oxidation-reduction process | GO:0055114 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Ribulose bisphosphate carboxylase small chain, domain | IPR000894 | - | 0.0 | - |
| Sma3 | Proteinase inhibitor I3, Kunitz legume | IPR002160 | - | 0.0 | - |
| Sma3 | TonB box, conserved site | IPR010916 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT1G67090.1 | RBCS1A ribulose bisphosphate carboxylase small chain 1A chr1:25048465-25049249 REVERSE LENGTH=180 | 1.0e-24 | 69% |
| RefSeq | Arabidopsis thaliana | NP_176880.1 | ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana] | 1.0e-24 | 69% |
| RefSeq | Populus trichocarpa | XP_002325043.1 | predicted protein [Populus trichocarpa] | 4.0e-30 | 78% |
| Full-Lengther Next Prediction |
|---|
Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: A9NXP2
Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 23 aas, your sequence is shorter than subject: 77 - 188
Fln protein:
E
Protein Length:
78
Fln nts:
G
Fln Alignment:
GD4IA4403GUJT8___PCLEFDAVGQVRRTSGVMIPGYYDGRYWTLWKLPMFGCTNSAQVLSELEECKKAYPNAYIR
A9NXP2_______________PCLEFDAVGQIQRTNGVMVPGYYDGRYWSLWKLPMFGCTNSAQVLSELEECKKAYPNAYIR
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
