SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78427

Length: 249 nt

UniGene Fasta

>sp_v3.0_unigene78427
AAACAGGACAGTTACACATACTCAAGTGTTCTGAGTGCATGTGCTAATCTAGCTGCTCTGGGTTATGGCAAGCATATCCATTCCCACATTATCAAAAATGGATTTGAGTCACATATGTCTGTAAACAATGCCCTTGTTACGATGTATTCCAAATGTGGTACTATAGATAACGCCTACCAAATATTCAATAAAATGGCTGACAGAAATGCAATCACATTCAATGCAATGATTANAGGATATGCCCAGCAT

Ace file of the UniGene sp_v3.0_unigene78427

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] emb\|CAB71047.1\| putative protein [Arabidopsis thaliana] gb\|AEE80164.1\| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]	-	-	1.0e-15	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61170.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:22638691-22641237 REVERSE LENGTH=783	4.0e-20	49%
RefSeq	Arabidopsis thaliana	NP_191676.1	pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]	6.0e-20	49%
RefSeq	Populus trichocarpa	XP_002321443.1	predicted protein [Populus trichocarpa]	5.0e-23	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 100 aas, your sequence is shorter than subject: 83 - 394

Fln protein: KQDSYTYSSVLSACANLAALGYGKHIHSHIIKNGFESHMSVNNALVTMYSKCGTIDNAYQIFNKMADRNAITFNAMIKGYAQH

Protein Length: 84

Fln nts: AAACAGGACAGTTACACATACTCAAGTGTTCTGAGTGCATGTGCTAATCTAGCTGCTCTGGGTTATGGCAAGCATATCCATTCCCACATTATCAAAAATGGATTTGAGTCACATATGTCTGTAAACAATGCCCTTGTTACGATGTATTCCAAATGTGGTACTATAGATAACGCCTACCAAATATTCAATAAAATGGCTGACAGAAATGCAATCACATTCAATGCAATGATTAaAGGATATGCCCAGCAT

Fln Alignment:

GD4IA4403F8059___KQDSYTYSSVLSACANLAALGYGKHIHSHIIKNGFESHMSVNNALVTMYSKCGTIDNAYQIFNKMADRNAITFNAMIKGYAQH
B8LKN6_______________KANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain