SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78404

Length: 267 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene78404
GAGGAGATCTATTACCAAATCATCCAAATTGAAACTTATTGTCATGTCAGCAACAGTTGATGCTAGCTTGTTCTCTCATTACTTTGGGGATTGTCCTATTATCACTGCAAAAGGCCGCACACACCCTGTAACTTCATTTTCCTTGAGGATGTTTATGAAAATCTTGAGTATCGTCTTGCTTCTGATTCACCAGCTGCACTAACAAACTCTACAATACCAAAGAAGAAGGTGGCGAAAAATATCGTTGACAATAGCCGGGGAAAAAAG

Ace file of the UniGene sp_v3.0_unigene78404 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	helicase associated domain-containing protein [Arabidopsis thaliana] gb\|AEE33493.1\| helicase associated domain-containing protein [Arabidopsis thaliana]	-	-	5.0e-17	73%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	54%
Sma3	Putative uncharacterized protein T15M6.6	-	-	7.797e-06	-

Source	Gene names
Sma3	At1g58050; T15M6.6;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G58060.1	RNA helicase family protein chr1:21489480-21501775 REVERSE LENGTH=1459	3.0e-19	73%
RefSeq	Arabidopsis thaliana	NP_176103.2	helicase associated domain-containing protein [Arabidopsis thaliana]	4.0e-19	73%
RefSeq	Populus trichocarpa	XP_002328701.1	predicted protein, partial [Populus trichocarpa]	3.0e-14	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8S6F3

Fln msg: Overlapping hits, possible frame ERROR between 145 and 124, Distance to subject end: 599 aas, your sequence is shorter than subject: 89 - 1426

Fln protein: RRSITKSSKLKLIVMSATVDASLFSHYFGDCPIITAKGRTxxxxxxxxxDVYENLEYRLASDSPAALTNSTIPKKKVAKNIVDNSRGKK

Protein Length: 90

Fln nts: GAGGAGATCTATTACCAAATCATCCAAATTGAAACTTATTGTCATGTCAGCAACAGTTGATGCTAGCTTGTTCTCTCATTACTTTGGGGATTGTCCTATTATCACTGCAAAAGGCCGCACAxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGTTTATGAAAATCTTGAGTATCGTCTTGCTTCTGATTCACCAGCTGCACTAACAAACTCTACAATACCAAAGAAGAAGGTGGCGAAAAATATCGTTGACAATAGCCGGGGAAAAAAG

Fln Alignment:

GD4IA4403GGCTJ___RRSITKSSKLKLIVMSATVDASLFSHYFGDCPIITAKGRTHxxxxxxxEDVYENLEYRLASDSPAALTNSTIPKKKVAKNIVDNSRGKK
D8S6F3_______________KRNEDKMNPLKVILMSATLDADRFSQYFGGCPVVVATGRTYxxxxxxxEDIYEQLEYRLSSDNPAALQNYSSHDKRASQNVVDKNRGRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain