SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78342

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene78342
TCTCCTTGAATAACCATATACTTGGTTCCTCCAATGAACAGGCCTGTTGGTGCAAGGAGAGCCTGGCTCCGTCATTCGAGGAAAGAAAGGATCTGGAGGAGTGACACTCAAGAAGACCAACTGTGCCCTGGTTATTGGTATATACGATGAACCAGTGACTCCAGGCGATTGCAATATGGTTGTGGAGAGGCTTGGTGATTACCTTATTGATCAGAACTTCTAGCTATTCTTGAGTCAGTAATT

Ace file of the UniGene sp_v3.0_unigene78342

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Profilin n=1 Tax=Picea sitchensis RepID=A9NMR7_PICSI	-	-	4.0e-25	91%
FL-Next	sp=Profilin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Profilin	-	-	0.0	-

Source	Gene names
Sma3	A0418; At2g19770; At4g29340; BETVII; Cin c 1; Cuc m2; D03; D106; F17A13.160; F6F22.20; GSVIVT00016642001; GSVIVT00016643001; GSVIVT00032130001; GSVIVT00034283001; LCM20; LCM9; LCS13; LOC_Os06g05880; LOC_Os10g17660; LOC_Os10g17680; Mal d 4.01; Mal d 4.02;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	actin cytoskeleton	GO:0015629	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Profilin/allergen	IPR002097	-	-
Sma3	Profilin, plant	IPR005455	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29340.1	PRF4 profilin 4 chr4:14447718-14448467 FORWARD LENGTH=134	3.0e-26	71%
RefSeq	Arabidopsis thaliana	NP_194663.1	profilin 4 [Arabidopsis thaliana]	4.0e-26	71%
RefSeq	Populus trichocarpa	XP_002324161.1	predicted protein [Populus trichocarpa]	7.0e-30	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMR7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 74 - 132

Fln protein: LLE*PYTWFLQ*TGLLVQGEPGSVIRGKKGSGGVTLKKTNCALVIGIYDEPVTPGDCNMVVERLGDYLIDQNF*

Protein Length: 75

Fln nts: TCTCCTTGAATAACCATATACTTGGTTCCTCCAATGAACAGGCCTGTTGGTGCAAGGAGAGCCTGGCTCCGTCATTCGAGGAAAGAAAGGATCTGGAGGAGTGACACTCAAGAAGACCAACTGTGCCCTGGTTATTGGTATATACGATGAACCAGTGACTCCAGGCGATTGCAATATGGTTGTGGAGAGGCTTGGTGATTACCTTATTGATCAGAACTTCTAG___CTATTCTTGAGTCAGTAATT

Fln Alignment:

GD4IA4403GZAFB___LLVQGEPGSVIRGKKGSGGVTLKKTNCALVIGIYDEPVTPGDCNMVVERLGDYLIDQNF
A9NMR7_______________MVIQGEPGFVIRGKKGSGGVTLKKTTCALVIGIYDEPVTPGDCNMVVERLGDYLIDQNF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain