SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78313

Length: 252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene78313
GGTTACGGTGAAGGATGGATGTGCTTTGGAAGGGCTCTGTGTGTGCTCCGAGGACAGACACTGTGGTCCCGAAAAGGGCTATTTCTGCAAAGCAGGAAGAATCTACGCGGATGCTAGGGTTTGTAGATACGAAGGATAATAAAACATGCGCATATTGCACCATTTGCGTACACAATGTTCTTAATTCTCAGCGAACGTTCATGATTCCTTTTACAGTTTAGAGCTGAAATGGACTAGTGATTATGCATGCGC

Ace file of the UniGene sp_v3.0_unigene78313 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Gulonolactone oxidase, putative	-	-	1.828e-07	-

Source	Gene names
Sma3	At2g46750; At2g46760; At5g56490; F15N18_130; GSVIVT00026155001; GSVIVT00032453001; OSJNBa0034E24.20; Os01g0687800; Os02g0124400; Os02g0124600; Os04g0361500; OsI_03321; OsI_05664; OsI_05665; OsI_15502; OsJ_05196; OsJ_05197; OsJ_14422; OsJ_27950; P0519D04.2

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46760.1	D-arabinono-1,4-lactone oxidase family protein chr2:19213028-19215166 REVERSE LENGTH=603	3.0e-17	74%
RefSeq	Arabidopsis thaliana	NP_182199.1	D-arabinono-1,4-lactone oxidase family protein [Arabidopsis thaliana]	4.0e-17	74%
RefSeq	Populus trichocarpa	XP_002324238.1	predicted protein [Populus trichocarpa]	4.0e-16	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAQ1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 53 aas, putative chimeric sequence, your sequence is shorter than subject: 46 - 363

Fln protein: VTVKDGCALEGLCVCSEDRHCGPEKGYFCKAGRIYADARVCRYEG*

Protein Length: 47

Fln nts: GGTTACGGTGAAGGATGGATGTGCTTTGGAAGGGCTCTGTGTGTGCTCCGAGGACAGACACTGTGGTCCCGAAAAGGGCTATTTCTGCAAAGCAGGAAGAATCTACGCGGATGCTAGGGTTTGTAGATACGAAGGATAA___TAAAACATGCGCATATTGCACCATTTGCGTACACAATGTTCTTAATTCTCAGCGAACGTTCATGATTCCTTTTACAGTTTAGAGCTGAAATGGACTAGTGATTATGCATGCGC

Fln Alignment:

GD4IA4403FSFBB___KDGCALEGLCVCSEDRHCGPEKGYFCKAGRIYADARVCR
D5AAQ1_______________KDGCALEGLCVCSEDKHCAPDKGYFCKSGRVYKEARVCR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain