SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78270

Length: 294 nt

UniGene Fasta

>sp_v3.0_unigene78270
CCGCACTTGAACCCGGTGGGACACCAATCCACGAACTGAATGGTCCTCTTGGTGTCCCACCGGGTTCAAGTGCGGTATCAATTATCAGCCTCCCACTGTAGTTCCTGGTGGGGATCTTGCCAAGGTCCAGAGGGCCGTCTGTATGATTTCCAACTCGACCAGTGTAGCAGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTATGCCAAGCGTGCCTTCGTGCACTGGTATGTGGGTGAGGGTATGGAGGAAGGAGAGTTCTCGGAGGCCCGTGAGGACTTGGCTGC

Ace file of the UniGene sp_v3.0_unigene78270

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH	-	-	1.00053e-42	91%
FL-Next	sp=Tubulin alpha-1 chain; Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).	-	-	0.0	91%
Sma3	Tubulin alpha-2 chain	-	-	1.377e-09	-

Source	Gene names
Sma3	AT1; AT1G50010; AT5G19780; ATUB3; ATub1; At1g04820; At1g50010; At1g64740; At5g19770; BYtuba; CGTU; F13O11.5; F3; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00025462001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g516

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14960.2	-	91%
RefSeq	Arabidopsis thaliana	NP_175423.1	tubulin alpha-2/alpha-4 chain [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002324047.1	tubulin alpha-7 chain [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6VAG1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 24 aas, your sequence is shorter than subject: 97 - 451

Fln protein: RT*TRWDTNPRTEWSSWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA

Protein Length: 98

Fln nts: CCGCACTTGAACCCGGTGGGACACCAATCCACGAACTGAATGGTCCTCTTGGTGTCCCACCGGGTTCAAGTGCGGTATCAATTATCAGCCTCCCACTGTAGTTCCTGGTGGGGATCTTGCCAAGGTCCAGAGGGCCGTCTGTATGATTTCCAACTCGACCAGTGTAGCAGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTATGCCAAGCGTGCCTTCGTGCACTGGTATGTGGGTGAGGGTATGGAGGAAGGAGAGTTCTCGGAGGCCCGTGAGGACTTGGCTGC

Fln Alignment:

GD4IA4403FRFDA___TNPRTEWSSWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA
Q6VAG1_______________TKRTIQFADWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain