SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78226

Length: 399 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene78226
GTCCACGTCTGCGCTCGCCGCGAAGACCACCGACAAGCTCGTGGCCGAGTTCCGCTATCTCCAGGCCAACGCCACCGGCTCGCTCTCCAAGTTTATGGAATACCTCACGTACGGATACATGATCGACAATGTCGCGCTGCTGATTACGGGTACCCTGCACGAGAGAGATACGCGCGAGTTGTTGGAAAGGTGTCACCCGCTCGGCTGGTTCGAGACCATGCCGGTGCTGTGCGTGGCGACCAACATCGAGGAACTATACAACTCCGTCCTGATTGAGACGCCGCTTGCGCCCTACTTCAAGGGCTCGCTCAGCCATCAGGATCTCGACGAACTTAACATTGAGATTATCCGCAACACCCTGTACAAGAACTACCTCGAGGACTTCCATCAGTGGATCAA

Ace file of the UniGene sp_v3.0_unigene78226 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similar to vacuolar ATP synthase subunit d n=1 Tax=Leptosphaeria maculans RepID=E5ADE2_LEPMC	-	-	0.0	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	H+-transporting two-sector ATPase, C (AC39) subunit	-	-	3.223e-09	-

Source	Gene names
Sma3	AT3g28710/MZN14_20; ATPvD1; At3g28710; At3g28715; CHLREDRAFT_135171; GSVIVT00020891001; MICPUN_107367; MZN14.22; MtrDRAFT_AC169177g14v1; MtrDRAFT_AC169177g19v1; OSTLU_119494; Os01g0587000; OsI_02618; OsJ_02396; Ot02g04450; PHYPADRAFT_110623; POPTRDRAFT_82

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, subunit C/D	IPR002843	-	0.0	-
Sma3	ATPase, V0 complex, subunit D	IPR016727	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G28710.1	ATPase, V0/A0 complex, subunit C/D chr3:10773144-10775594 REVERSE LENGTH=351	55%
RefSeq	Arabidopsis thaliana	NP_189512.1	V-type proton ATPase subunit d1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002324040.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ3

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 132 - 351

Fln protein: STSALAAKTTDKLVAEFRYLQANATGSLSKFMEYLTYGYMIDNVALLITGTLHERDTRELLERCHPLGWFETMPVLCVATNIEELYNSVLIETPLAPYFKGSLSHQDLDELNIEIIRNTLYKNYLEDFHQWI

Protein Length: 133

Fln nts: GTCCACGTCTGCGCTCGCCGCGAAGACCACCGACAAGCTCGTGGCCGAGTTCCGCTATCTCCAGGCCAACGCCACCGGCTCGCTCTCCAAGTTTATGGAATACCTCACGTACGGATACATGATCGACAATGTCGCGCTGCTGATTACGGGTACCCTGCACGAGAGAGATACGCGCGAGTTGTTGGAAAGGTGTCACCCGCTCGGCTGGTTCGAGACCATGCCGGTGCTGTGCGTGGCGACCAACATCGAGGAACTATACAACTCCGTCCTGATTGAGACGCCGCTTGCGCCCTACTTCAAGGGCTCGCTCAGCCATCAGGATCTCGACGAACTTAACATTGAGATTATCCGCAACACCCTGTACAAGAACTACCTCGAGGACTTCCATCAGTGGATCAA

Fln Alignment:

GD4IA4403G8MFC___TSALAAKTTDKLVAEFRYLQANATGSLSKFMEYLTYGYMIDNVALLITGTLHERDTRELLERCHPLGWFETMPVLCVATNIEELYNSVLIETPLAPYFKGSLSHQDLDELNIEIIRNTLYKNYLEDFHQW
B8LLZ3_______________TTTIVEKCTLKLVDEYKHMLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYNF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain