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UniGene Name: sp_v3.0_unigene78224
Length: 238 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
 UniGene Fasta (sense)
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| >sp_v3.0_unigene78224
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Ace file of the UniGene sp_v3.0_unigene78224 (antisense)
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Auxin response factor 27 n=1 Tax=Zea mays RepID=D9HNV4_MAIZE | - | - | 6.0e-18 | 95% |
| FL-Next | tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). | - | - | 0.0 | 83% |
| Sma3 | Auxin response factor, putative | - | - | 2.912e-28 | - |
| Source | Gene names |
|---|---|
| Sma3 | ARF1; ARF10; ARF11; ARF12; ARF14; ARF15; ARF16; ARF17; ARF19; ARF2; ARF21; ARF23; ARF24; ARF25; ARF3; ARF4; ARF5; ARF6; ARF6A; ARF6B; ARF7; ARF7A; ARF7B; ARF8; ARF9; AT4G23980; At1g19220; At1g19850; At1g30330; At1g59750; At2g33860; At4g23980; At5g20730; A |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | sequence-specific DNA binding transcription factor activity | GO:0003700 | Molecular Function | 0.0 | - |
| Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
| Sma3 | transcription activator activity | GO:0016563 | Molecular Function | 0.0 | - |
| Sma3 | protein dimerization activity | GO:0046983 | Molecular Function | 0.0 | - |
| Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
| Sma3 | negative regulation of cell proliferation | GO:0008285 | Biological Process | 0.0 | - |
| Sma3 | gravitropism | GO:0009630 | Biological Process | 0.0 | - |
| Sma3 | phototropism | GO:0009638 | Biological Process | 0.0 | - |
| Sma3 | response to ethylene stimulus | GO:0009723 | Biological Process | 0.0 | - |
| Sma3 | response to hormone stimulus | GO:0009725 | Biological Process | 0.0 | - |
| Sma3 | auxin mediated signaling pathway | GO:0009734 | Biological Process | 0.0 | - |
| Sma3 | blue light signaling pathway | GO:0009785 | Biological Process | 0.0 | - |
| Sma3 | auxin metabolic process | GO:0009850 | Biological Process | 0.0 | - |
| Sma3 | flower development | GO:0009908 | Biological Process | 0.0 | - |
| Sma3 | positive regulation of flower development | GO:0009911 | Biological Process | 0.0 | - |
| Sma3 | longitudinal axis specification | GO:0009942 | Biological Process | 0.0 | - |
| Sma3 | fruit dehiscence | GO:0010047 | Biological Process | 0.0 | - |
| Sma3 | vegetative phase change | GO:0010050 | Biological Process | 0.0 | - |
| Sma3 | leaf senescence | GO:0010150 | Biological Process | 0.0 | - |
| Sma3 | abaxial cell fate specification | GO:0010158 | Biological Process | 0.0 | - |
| Sma3 | floral organ abscission | GO:0010227 | Biological Process | 0.0 | - |
| Sma3 | leaf vascular tissue pattern formation | GO:0010305 | Biological Process | 0.0 | - |
| Sma3 | lateral root primordium development | GO:0010386 | Biological Process | 0.0 | - |
| Sma3 | DNA integration | GO:0015074 | Biological Process | 0.0 | - |
| Sma3 | GO:0016481 | Biological Process | 0.0 | - | |
| Sma3 | negative regulation of transcription, DNA-dependent | GO:0045892 | Biological Process | 0.0 | - |
| Sma3 | root development | GO:0048364 | Biological Process | 0.0 | - |
| Sma3 | leaf development | GO:0048366 | Biological Process | 0.0 | - |
| Sma3 | ovule development | GO:0048481 | Biological Process | 0.0 | - |
| Sma3 | meristem development | GO:0048507 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Integrase, catalytic core | IPR001584 | - | 0.0 | - |
| Sma3 | Zinc finger, CCHC-type | IPR001878 | - | 0.0 | - |
| Sma3 | Aminotransferase, class-II, pyridoxal-phosphate binding site | IPR001917 | - | 0.0 | - |
| Sma3 | Smr protein/MutS2 C-terminal | IPR002625 | - | 0.0 | - |
| Sma3 | AUX/IAA protein | IPR003311 | - | 0.0 | - |
| Sma3 | B3 DNA binding domain | IPR003340 | - | 0.0 | - |
| Sma3 | Retrotransposon gag protein | IPR005162 | - | 0.0 | - |
| Sma3 | Ribosomal protein S12/S23 | IPR006032 | - | 0.0 | - |
| Sma3 | Protein of unknown function DUF482 | IPR007434 | - | 0.0 | - |
| Sma3 | Auxin response factor | IPR010525 | - | 0.0 | - |
| Sma3 | Aux/IAA-ARF-dimerisation | IPR011525 | - | 0.0 | - |
| Sma3 | Domain of unknown function DUF1771 | IPR013899 | - | 0.0 | - |
| Sma3 | DNA methylase, N-4 cytosine-specific, conserved site | IPR017985 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT5G37020.1 | ARF8, ATARF8 auxin response factor 8 chr5:14630151-14634106 FORWARD LENGTH=811 | 2.0e-21 | 92% |
| RefSeq | Arabidopsis thaliana | NP_001078672.1 | auxin response factor 8 [Arabidopsis thaliana] | 2.0e-21 | 92% |
| RefSeq | Populus trichocarpa | XP_002307706.1 | predicted protein, partial [Populus trichocarpa] | 4.0e-22 | 95% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: E1UHY2
Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 679 aas, your sequence is shorter than subject: 79 - 919
Fln protein:
*
Protein Length:
80
Fln nts:
T
Fln Alignment:
GD4IA4403FQ738___VFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYTMQPPAQELV
E1UHY2_______________MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELV
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
