SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78207

Length: 355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene78207
TAGATTTCTACTACCGCCACAGTCGTGATCTTCTCCTTAGGTTACAGCTTGCCAAAGAAAATCCAGTTCCTCCTCTTCCACTTCAAGTTAAAATAGAAAATAGCAATGACATCAATGAGGAAGCAATACGAACAACATTGATTAGAGCAACACGCTTCTGGGGTACCATGCAAGTAGATGATGGACACTGGCCTTGTGATAACTCGAGGGGTTATGTTTGTTATGGCAAATATAGTTATTTTCATATATGTGACAGGAGCATTAAACACAGTTCTAACAGAAATGCATCAAAAAGAAATATGTCGCTATATGTATAACCATCAGAATGAAGATGGAGGTTGGGGAGAGGGAGGAC

Ace file of the UniGene sp_v3.0_unigene78207 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cycloartenol synthase n=2 Tax=Pinaceae RepID=Q9FQM1_ABIMA	-	-	3.0e-35	61%
FL-Next	tr=Cycloartenol synthase; Abies magnifica (Red fir).	-	-	0.0	61%
Sma3	Cycloartenol synthase	-	-	8.217e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cycloartenol synthase.	EC:5.4.99.8	-	1.479e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Steroid biosynthesis	00100	1.479e-10	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.479e-10	%
Sma3	Biosynthesis of plant hormones	01070	1.479e-10	%
Sma3	Metabolic pathways	01100	1.479e-10	%
Sma3	Biosynthesis of secondary metabolites	01110	1.479e-10	%

Source	Gene names
Sma3	ACX; ALLOSC1; CAS1; CASBPX2; CSOSC1; GgCAS1; KcCAS; OJ1679_B08.9; OSC5; Os02g0139500; Os02g0139700; OsI_05794; OsJ_05323; PHYPADRAFT_206381; cas1; cs1;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	intramolecular transferase activity	GO:0016866	Molecular Function	-
Sma3	cycloartenol synthase activity	GO:0016871	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase, conserved site	IPR002365	-	-
Sma3	Squalene cyclase	IPR018333	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G07050.1	CAS1 cycloartenol synthase 1 chr2:2924629-2930295 FORWARD LENGTH=759	2.0e-29	50%
RefSeq	Arabidopsis thaliana	NP_178722.1	cycloartenol synthase [Arabidopsis thaliana]	3.0e-29	50%
RefSeq	Populus trichocarpa	XP_002310905.1	predicted protein [Populus trichocarpa]	4.0e-28	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FQM1

Fln msg: Separated hits, possible frame ERROR between 200 and 208, Distance to subject end: 588 aas, your sequence is shorter than subject: 118 - 756

Fln protein: DFYYRHSRDLLLRLQLAKENPVPPLPLQVKIENSNDINEEAIRTTLIRATRFWGTMQVDDGHWPCxxxxGVMFVMANIVIFIYVTGALNTVLTEMHQKEICRYMYNHQNEDGGWGEGG

Protein Length: 119

Fln nts: TAGATTTCTACTACCGCCACAGTCGTGATCTTCTCCTTAGGTTACAGCTTGCCAAAGAAAATCCAGTTCCTCCTCTTCCACTTCAAGTTAAAATAGAAAATAGCAATGACATCAATGAGGAAGCAATACGAACAACATTGATTAGAGCAACACGCTTCTGGGGTACCATGCAAGTAGATGATGGACACTGGCCTTGTGAxxxxxxxxxAGGGGTTATGTTTGTTATGGCAAATATAGTTATTTTCATATATGTGACAGGAGCATTAAACACAGTTCTAACAGAAATGCATCAAAAAGAAATATGTCGCTATATGTATAACCATCAGAATGAAGATGGAGGTTGGGGAGAGGGAGGAC

Fln Alignment:

GD4IA4403GN4BU___FYYRHSRDLLLRLQLAKENPVPPLPLQVKIENSNDINEEAIRTTLIRATRFWGTMQVDDGHWPCDxxxGVMFVMANIVIFIYVTGALNTVLTEMHQKEICRYMYNHQNEDGGWG
Q9FQM1_______________FIQHHSADLLMRLQCGGENPLSPLPAQVKLESANDITEEVIQTTLVRAIRFYATIQAHDGHWPGDxxxGPMFLMPGLVIALYVTGALNAVLSEMHKKEICRYLYNHQNEDGGWG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain