SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78155

Length: 254 nt

UniGene Fasta

>sp_v3.0_unigene78155
ATGATGGAACAGTTGACTGGAAGCTTAGATGGTCGGATTGACTACATGCTTCAAGATTCCACCTTCGAACATCCTTACATTTCAGCAATCAGCTCGCATACATCTTATTGGCGAGATTTAGACACAGCTCTATTCATTCTCAAACATTTGTACCGTGAAATACCGCCAGATCCTCCAGAAGGCATAAAAGCTAAACAGAAAGGTAGATCCATGACATTGAATGACAATATAGACTCCCTAGATGATGAAATGAC

Ace file of the UniGene sp_v3.0_unigene78155

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein shoot gravitropism 2 (SGR2) [Arabidopsis thaliana] dbj\|BAB71959.1\| shoot gravitropism 2 [Arabidopsis thaliana] gb\|AEE31360.1\| protein shoot gravitropism 2 (SGR2) [Arabidopsis thaliana]	-	-	3.0e-19	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	At1g31480; F27M3_29; GSVIVT00021803001; Os08g0110700; OsI_27560; OsJ_25787; P0007D08.37; PHYPADRAFT_184469; POPTRDRAFT_1110979; POPTRDRAFT_809621; RCOM_0742540; SGR2; T8E3.1;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	detection of gravity	GO:0009590	Biological Process	-
Sma3	amyloplast organization	GO:0009660	Biological Process	-
Sma3	negative gravitropism	GO:0009959	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	DDHD	IPR004177	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G31480.1	SGR2 shoot gravitropism 2 (SGR2) chr1:11266225-11271527 FORWARD LENGTH=933	3.0e-24	70%
RefSeq	Arabidopsis thaliana	NP_174433.2	protein shoot gravitropism 2 (SGR2) [Arabidopsis thaliana]	3.0e-24	70%
RefSeq	Populus trichocarpa	XP_002325941.1	predicted protein [Populus trichocarpa]	1.0e-24	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A966

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 84 - 209

Fln protein: MMEQLTGSLDGRIDYMLQDSTFEHPYISAISSHTSYWRDLDTALFILKHLYREIPPDPPEGIKAKQKGRSMTLNDNIDSLDDEM

Protein Length: 85

Fln nts: ATGATGGAACAGTTGACTGGAAGCTTAGATGGTCGGATTGACTACATGCTTCAAGATTCCACCTTCGAACATCCTTACATTTCAGCAATCAGCTCGCATACATCTTATTGGCGAGATTTAGACACAGCTCTATTCATTCTCAAACATTTGTACCGTGAAATACCGCCAGATCCTCCAGAAGGCATAAAAGCTAAACAGAAAGGTAGATCCATGACATTGAATGACAATATAGACTCCCTAGATGATGAAATGAC

Fln Alignment:

GD4IA4403G5MH7___MMEQLTGSLDGRIDYMLQDSTFEHPYISAISSHTSYWRDLDTALFILKHLYREIPPDPPEGIKAKQKGRSMTLNDNIDSLDDEM
D5A966_______________ILEQLTGSLDGRLDYMLQDSTFEHPYISAISSHTSYWRDLDTALFILKHLYREIPPEPPECIKAKQKGRSMTLSDNKDFLDDEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain