SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78136

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene78136
CCAACGGGGAAGATGTCCCCTCGGACCACTGGGCGTGGCGAAAATATGGGCAGAAGCCCATCAAAGGATCTCCATACCCAAGGGGTTATTACAGGTGCAGTAGTTCTAAGGGCTGTTTAGCAAAGAAGCAGGTCGAGCGCGATCGTACAGACCCAAATATGGTGATAATGACTTACACATCGGACCATAACCATCCTTGGCCTACTCAGAGAAGCTCCCTCGCAGGCTCCATTAGGCAAACGAGGTGCATCAAGTCGGAGGAGGCGTGCCCAAATCAAGAAATCGCTGGTTCGAAGCCCGAGAAAACGTTGATATGCTCAAGGCTCGTCAGGCAGACTCAGACTCCGTACTGAATGGCTTCACCTCAATT

Ace file of the UniGene sp_v3.0_unigene78136

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative WRKY transcription factor 35 [Arabidopsis thaliana] sp\|O64747.1\|WRK35_ARATH RecName: Full=Probable WRKY transcription factor 35; AltName: Full=WRKY DNA-binding protein 35 gb\|AAK96201.1\|AF404863_1 WRKY transcription factor 35 [Arabidopsis thaliana	-	-	1.0e-35	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	WRKY transcription factor, putative	-	-	2.826e-19	-

Source	Gene names
Sma3	A_IG002N01.6; At1g29280; At1g30650; At2g23320; At2g30590; At2g34830; At3g04670; At3g58710; At4g01250; At4g18170; At4g23550; At4g24240; At5g28650; At5g45050; At5g45260; At5g45260/At5g45270; At5g46350; At5g52830; F15J5.1; F19I3.6; F2N1.6; F4I4.30; F7O18.30;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Transcription factor, WRKY group IIc	IPR017396	-	-
Sma3	Transcription factor, WRKY group Iie	IPR017412	-	-
Sma3	Zn-cluster domain	IPR018872	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G34830.1	WRKY35, MEE24, AtWRKY35 WRKY DNA-binding protein 35 chr2:14693839-14696378 REVERSE LENGTH=427	2.94273e-44	81%
RefSeq	Arabidopsis thaliana	NP_181029.1	putative WRKY transcription factor 35 [Arabidopsis thaliana]	4.06377e-44	81%
RefSeq	Populus trichocarpa	XP_002299016.1	predicted protein [Populus trichocarpa]	5.60519e-45	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD76

Fln msg: your sequence is shorter than subject: 117 - 344

Fln protein: NGEDVPSDHWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLAKKQVERDRTDPNMVIMTYTSDHNHPWPTQRSSLAGSIRQTRCIKSEEACPNQEIAGSKPEKTLICSRLVRQTQTPY*

Protein Length: 118

Fln nts: CCAACGGGGAAGATGTCCCCTCGGACCACTGGGCGTGGCGAAAATATGGGCAGAAGCCCATCAAAGGATCTCCATACCCAAGGGGTTATTACAGGTGCAGTAGTTCTAAGGGCTGTTTAGCAAAGAAGCAGGTCGAGCGCGATCGTACAGACCCAAATATGGTGATAATGACTTACACATCGGACCATAACCATCCTTGGCCTACTCAGAGAAGCTCCCTCGCAGGCTCCATTAGGCAAACGAGGTGCATCAAGTCGGAGGAGGCGTGCCCAAATCAAGAAATCGCTGGTTCGAAGCCCGAGAAAACGTTGATATGCTCAAGGCTCGTCAGGCAGACTCAGACTCCGTACTGA___ATGGCTTCACCTCAATT

Fln Alignment:

GD4IA4403GI9XX___DVPSDHWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLAKKQVERDRTDPNMVIMTYTSDHNH
D5AD76_______________DIPSDEFSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERALDDPNVLIVTYEGEHSH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain