SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78111

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene78111
TAATTATGTGTATCTTCTTCCAGCTGAAGTTATAGGCATTGGAAATGCCAGCAGTCCTGAAGAAATACAGAGACATGTCAAAGAATTCAGAGATACACTGCAGTTGTTTGAGATCCGAAAAATGGTTGGAACAGCAGTTGCTGTTAAGCATGCTTTGCTACCAAAAGATATTATCAAGATTTCATTGTTACGTTATTCTCGCATTGTCCTACCTCTTGCCCCTTGTGAAGTTCTTGT

Ace file of the UniGene sp_v3.0_unigene78111

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative tRNA pseudouridine synthase [Arabidopsis thaliana] sp\|O22928.1\|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gb\|AAC16945.1\| putative pseudouridine	-	-	9.0e-10	64%
FL-Next	sp=Putative tRNA pseudouridine synthase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%

Source	Gene names
Sma3	At2g30320; GSVIVT00023973001; LOC_Os03g21980; Os03g0338600; OsI_11484; OsJ_10771; POPTRDRAFT_239920; RCOM_1135690; T09D09.13; VITISV_034891;

Source	GOs	Term	Type	Identity
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pseudouridine synthase I, TruA	IPR001406	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G30320.1	Pseudouridine synthase family protein chr2:12925728-12927896 REVERSE LENGTH=510	1.0e-13	64%
RefSeq	Arabidopsis thaliana	NP_180591.1	putative tRNA pseudouridine synthase [Arabidopsis thaliana]	2.0e-13	64%
RefSeq	Populus trichocarpa	XP_002319961.1	predicted protein, partial [Populus trichocarpa]	2.0e-13	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22928

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 78 - 510

Fln protein: NYVYLLPAEVIGIGNASSPEEIQRHVKEFRDTLQLFEIRKMVGTAVAVKHALLPKDIIKISLLRYSRIVLPLAPCEVL

Protein Length: 79

Fln nts: TAATTATGTGTATCTTCTTCCAGCTGAAGTTATAGGCATTGGAAATGCCAGCAGTCCTGAAGAAATACAGAGACATGTCAAAGAATTCAGAGATACACTGCAGTTGTTTGAGATCCGAAAAATGGTTGGAACAGCAGTTGCTGTTAAGCATGCTTTGCTACCAAAAGATATTATCAAGATTTCATTGTTACGTTATTCTCGCATTGTCCTACCTCTTGCCCCTTGTGAAGTTCTTGT

Fln Alignment:

GD4IA4403FS5AC___DTLQLFEIRKMVGTAVAVKHALLPKDIIKISLLRYSRIVLPLAPCEVL
O22928_______________ESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain