SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78071

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene78071
GATAAGACAGGCAATGAAATCTGGAAGCTGGAAAAGCTGTTTCTCAATTCCACGTTTCCCCTGCAACTGGTATTGAAAAGATAAGACAGGCCTACATTGAAAAGGAGGATAGTAAGAAGTTGAAGCAGAAGCAGAGAGAACGGATGCAACCAAAGATGGGAAAAATGGACATTGATTATCAGGTTCTGCATGATGCATTCTTTAAGTACCAAACAAAGCCTAAGCTGACAACTCA

Ace file of the UniGene sp_v3.0_unigene78071

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Splicing factor 3B subunit, putative n=1 Tax=Ricinus communis RepID=B9RZ56_RICCO	-	-	3.0e-25	100%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	100%
Sma3	Spliceosome associated protein-like	-	-	5.965e-09	-

Source	Gene names
Sma3	AT4g21660; At4g21660; CHLREDRAFT_123204; F17L22.120; GSVIVT00010279001; MICPUCDRAFT_32583; MICPUN_106896; MtrDRAFT_AC149135g30v2; OSTLU_119367; Os02g0827300; OsI_09533; OsJ_08964; Ot02g06350; P0452F04.27; PHYPADRAFT_132792; PHYPADRAFT_201031; POPTRDRAFT_7

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	mRNA processing	GO:0006397	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	PSP, proline-rich	IPR006568	-	0.0	-
Sma3	Domain of unknown function DUF382	IPR007180	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21660.2	proline-rich spliceosome-associated (PSP) family protein chr4:11506259-11509772 REVERSE LENGTH=598	2.0e-30	96%
RefSeq	Arabidopsis thaliana	NP_193897.2	splicing factor 3B subunit 2 [Arabidopsis thaliana]	3.0e-30	96%
RefSeq	Populus trichocarpa	XP_002305682.1	predicted protein [Populus trichocarpa]	4.0e-32	100%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H264

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 296 aas, your sequence is shorter than subject: 77 - 585

Fln protein: *DRQ*NLEAGKAVSQFHVSPATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTT

Protein Length: 78

Fln nts: GATAAGACAGGCAATGAAATCTGGAAGCTGGAAAAGCTGTTTCTCAATTCCACGTTTCCCCTGCAACTGGTATTGAAAAGATAAGACAGGCCTACATTGAAAAGGAGGATAGTAAGAAGTTGAAGCAGAAGCAGAGAGAACGGATGCAACCAAAGATGGGAAAAATGGACATTGATTATCAGGTTCTGCATGATGCATTCTTTAAGTACCAAACAAAGCCTAAGCTGACAACTCA

Fln Alignment:

GD4IA4403G0AHM___ATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTT
B9H264_______________ATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain