SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78055

Length: 120 nt

UniGene Fasta

>sp_v3.0_unigene78055
TCCAGGATACCACTCTGGGTTCTTTACTGTCTGCTTTGATGCAGCACTGTGATCCTCCTCAGAGGAGATACCCGTTGGAAAAGGGTGTTACCTCCCCCATGGTGGCCAACTGGAAATGAG

Ace file of the UniGene sp_v3.0_unigene78055

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor EIL2 n=1 Tax=Vigna radiata RepID=Q8SA70_VIGRA	-	-	5.0e-13	87%
FL-Next	sp=Protein ETHYLENE INSENSITIVE 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%
Sma3	Ethylene signal transcription factor	-	-	1.352e-15	-

Source	Gene names
Sma3	117M18_12; At1g73730; At2g27050; At3g20770; At5g10120; At5g21120; At5g65100; B1168A08.22; CmEIL1; CmEIL2; EIL; EIL1; EIL2; EIL3; EIL4; EIL5; EIN3; EIN3A; EIN3B; EIN3C; EIN3D; EIN3F; EIN3a; EIN3b; F25P22.15; GSVIVT00008539001; GSVIVT00017405001; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Sodium/solute symporter	IPR001734	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Ethylene insensitive 3	IPR006957	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20770.1	EIN3, AtEIN3 Ethylene insensitive 3 family protein chr3:7260702-7262588 REVERSE LENGTH=628	2.0e-14	81%
RefSeq	Arabidopsis thaliana	NP_188713.1	protein ethylene insensitive 3 [Arabidopsis thaliana]	3.0e-14	81%
RefSeq	Populus trichocarpa	XP_002310961.1	ethylene-insensitive 3d [Populus trichocarpa]	1.0e-14	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24606

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 408 aas, your sequence is shorter than subject: 39 - 628

Fln protein: QDTTLGSLLSALMQHCDPPQRRYPLEKGVTSPMVANWK*

Protein Length: 40

Fln nts: TCCAGGATACCACTCTGGGTTCTTTACTGTCTGCTTTGATGCAGCACTGTGATCCTCCTCAGAGGAGATACCCGTTGGAAAAGGGTGTTACCTCCCCCATGGTGGCCAACTGGAAATGAG

Fln Alignment:

GD4IA4403GTEGM___QDTTLGSLLSALMQHCDPPQRRYPLEKGVTSPMVANWK
O24606_______________QDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain