SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78041

Length: 332 nt

UniGene Fasta

>sp_v3.0_unigene78041
ACTACAATCTCTTCGATGATGCCACTTTCAAAAATATGACGGTTCAGCAGAACATCGACTACATCAAAACCACAAGAGCTCAAACTCTGCAGAGCCTCGTCTCCGCCAATGGTCCTCTCATTTTTGTTGGGGAATGGGTGGATGAGTGGGAACTGAACAGTGCGACACAGTCGGATTATCAAAGGTACGGAGATGCACAGTTACAAGTATACGGTGAAGCTTCTTTCGGATGGGCATATTGGACGCTAAGAAACATTGGTAGCAGGCACTGGGATTTGGAATGGATGGTGAAAAATCAGTACCTTCTATTGCCTGCATCAAGCCAAAGTTAA

Ace file of the UniGene sp_v3.0_unigene78041

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Putative Glucan 1,3-beta-glucosidase	-	-	5.669e-09	-

Source	Gene names
Sma3	GSVIVT00011447001; GSVIVT00011902001; GSVIVT00011904001; GSVIVT00015266001; LOC_Os10g22520; LOC_Os10g22570; OJ1003C07.1; OJ1111_H02.28; OJ1208D02.11; OJ1208D02.5; OSJNBa0037H06.1; Os05g0244500; Os08g0484100; Os10g0370500; Os10g0370800; OsI_19136; OsI_1913

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	IPR013114	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310872.1	predicted protein, partial [Populus trichocarpa]	1.0e-37	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKR6

Fln msg: your sequence is shorter than subject: 110 - 511

Fln protein: YNLFDDATFKNMTVQQNIDYIKTTRAQTLQSLVSANGPLIFVGEWVDEWELNSATQSDYQRYGDAQLQVYGEASFGWAYWTLRNIGSRHWDLEWMVKNQYLLLPASSQS*

Protein Length: 111

Fln nts: ACTACAATCTCTTCGATGATGCCACTTTCAAAAATATGACGGTTCAGCAGAACATCGACTACATCAAAACCACAAGAGCTCAAACTCTGCAGAGCCTCGTCTCCGCCAATGGTCCTCTCATTTTTGTTGGGGAATGGGTGGATGAGTGGGAACTGAACAGTGCGACACAGTCGGATTATCAAAGGTACGGAGATGCACAGTTACAAGTATACGGTGAAGCTTCTTTCGGATGGGCATATTGGACGCTAAGAAACATTGGTAGCAGGCACTGGGATTTGGAATGGATGGTGAAAAATCAGTACCTTCTATTGCCTGCATCAAGCCAAAGTTAA___

Fln Alignment:

GD4IA4403HA2UT___YNLFDDATFKNMTVQQNIDYIKTTRAQTLQSLVSANGPLIFVGEWVDEWELNSATQSDYQRYGDAQLQVYGEASFGWAYWTLRNIGSRHWDLEWMVKNQYLLL
B8LKR6_______________YNLYDDSTFKSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTNEWEYQGASMSDYQRFGKAQLQVYGTATFGWSYWTLKNV-QNHWSFEWMVQNNYLQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain