SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78027

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene78027
CACCTGGAACTTTATGTGTACCCAAAACACAAAACGAATTGAAGGAAGTTGAGTCCATTCACAAGGTTCTAGGTCTCTATATTTGGTTGAGCTTCCGCTTGGAGGAAAGTTTTCCAAATCGAGAATTGGCATATTCACAGAAAGCACTTTGTGGCATGCTGATCGAAGAGTACTTGGAAAGATT

Ace file of the UniGene sp_v3.0_unigene78027

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA helicase like protein [Arabidopsis thaliana]	-	-	7.0e-16	66%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	78%

Source	Gene names
Sma3	At4g14790; GSVIVT00020028001; LOC_Os03g53500; OJ1124_H03.19; Os03g0746500; OsI_13485; OsI_13490; OsJ_12550; POPTRDRAFT_566213; RCOM_0911510; suv3;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3		IPR014021	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G14790.1	ATSUV3, EDA15 ATP-dependent RNA helicase, mitochondrial (SUV3) chr4:8496351-8499829 REVERSE LENGTH=571	5.0e-21	66%
RefSeq	Arabidopsis thaliana	NP_193215.2	ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis thaliana]	6.0e-21	66%
RefSeq	Populus trichocarpa	XP_002315757.1	predicted protein [Populus trichocarpa]	2.0e-26	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HUT1

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 60 - 571

Fln protein: PGTLCVPKTQNELKEVESIHKVLGLYIWLSFRLEESFPNRELAYSQKALCGMLIEEYLER

Protein Length: 61

Fln nts: CACCTGGAACTTTATGTGTACCCAAAACACAAAACGAATTGAAGGAAGTTGAGTCCATTCACAAGGTTCTAGGTCTCTATATTTGGTTGAGCTTCCGCTTGGAGGAAAGTTTTCCAAATCGAGAATTGGCATATTCACAGAAAGCACTTTGTGGCATGCTGATCGAAGAGTACTTGGAAAGATT

Fln Alignment:

GD4IA4403GU087___PGTLCVPKTQNELKEVESIHKVLGLYIWLSFRLEESFPNRELAYSQKALCGMLIEEYLER
B9HUT1_______________PGTLQVPKTESALKELESIHKVLDLYVWLSFRLEDSFPDRELAASQKAICGLLIEEFLER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain