SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77991

Length: 310 nt

UniGene Fasta

>sp_v3.0_unigene77991
TTATAGTTATGGCATTTTGTTATTGGAAATGATTACTAGAAAAAGACCAACAAGTGACATGTTTGTAGGAGACTTGAACTTGCATAAATGGGTGAACTTAGCATTTCCAGACATAATGAAGGAGGTAATTGACAATGATCTCTTGAGGAAAATGGATGGAGATGAAATTGGGAAAATGATGCATATAAATGCATACTTTCTTTCATAAATGTTGGTTTGTTATGCTCAAAAGATTCACCTACAGAACGTCCAACTATGAGAGATGTGTCAACTATGTTGGAGAGTCTTAGAGAGGATTTGCTCAATCACA

Ace file of the UniGene sp_v3.0_unigene77991

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47580.1	Leucine-rich repeat protein kinase family protein chr3:17532687-17535810 FORWARD LENGTH=1011	1.0e-11	50%
RefSeq	Arabidopsis thaliana	NP_190342.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	2.0e-11	50%
RefSeq	Populus trichocarpa	XP_002332048.1	predicted protein, partial [Populus trichocarpa]	2.0e-16	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW30

Fln msg: Separated hits, possible frame ERROR between 151 and 190, Distance to subject end: 33 aas, your sequence is shorter than subject: 103 - 247

Fln protein: YSYGILLLEMITRKRPTSDMFVGDLNLHKWVNLAFPDIMKEVIDNDLLRxxxxxxxxxxxxxxCILSFINVGLLCSKDSPTERPTMRDVSTMLESLREDLLNH

Protein Length: 104

Fln nts: TTATAGTTATGGCATTTTGTTATTGGAAATGATTACTAGAAAAAGACCAACAAGTGACATGTTTGTAGGAGACTTGAACTTGCATAAATGGGTGAACTTAGCATTTCCAGACATAATGAAGGAGGTAATTGACAATGATCTCTTGAGGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGCATACTTTCTTTCATAAATGTTGGTTTGTTATGCTCAAAAGATTCACCTACAGAACGTCCAACTATGAGAGATGTGTCAACTATGTTGGAGAGTCTTAGAGAGGATTTGCTCAATCACA

Fln Alignment:

GD4IA4403F4IL1___YSYGILLLEMITRKRPTSDMFVGDLNLHKWVNLAFPDIMKEVIDNDLLRKxxxxxxxxxxxxxCILSFINVGLLCSKDSPTERPTMRDVSTMLESLRE
A9NW30_______________YSYGIVLLEMLTGKKPTDNMFVEGMDLQKWVGNSFPNQLGEIVDNSLLRRxxxxxxxxxxxxxCLSQSITMGLLCTKDAPKERPTMMDIVGTLQSIRD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain