SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77985

Length: 363 nt

UniGene Fasta

>sp_v3.0_unigene77985
GTTACCCTTTACCTTAGAGCAAATAGATATCTCCTCCAATGGCCTCACAGGCCCCATTCCTGAACAATTCTTGGAATCCCAATCAATTCACCTTTGTGAATTTGTCTCGCAATAACTTATCCTGCACTCTGCCTGCAAATTTCTTGAGCTCTCAGGCGCAACTCAAGATCCTAGATCTCTCATTCAACAATTTTTCCGGGCCAATATCTTTTTTCGATCTGAATCTCTCTGCCTGCCATAATCTGGTATCTATAGACCTGTCCTCGAACCATCTGGTAGGAGAGATCCCGCCCTCGTTCTCCAAATGCATTGCATTGCAGAGTCTGAATTTCTCGTCGAATGAATTCGAGGGTACCATCCCTA

Ace file of the UniGene sp_v3.0_unigene77985

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase bri1, putative n=2 Tax=eudicotyledons RepID=B9S7D4_RICCO	-	-	4.0e-21	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	RCOM_0777790;

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002312487.1	predicted protein [Populus trichocarpa]	6.0e-21	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 699 aas, your sequence is shorter than subject: 38 - 946

Fln protein: LPFTLEQIDISSNGLTGPIPEQFLESQSIHLCEFVSQ*

Protein Length: 39

Fln nts: GTTACCCTTTACCTTAGAGCAAATAGATATCTCCTCCAATGGCCTCACAGGCCCCATTCCTGAACAATTCTTGGAATCCCAATCAATTCACCTTTGTGAATTTGTCTCGCAATAACTTATCCTGCACTCTGCCTGCAAATTTCTTGAGCTCTCAGGCGCAACTCAAGATCCTAGATCTCTCATTCAACAATTTTTCCGGGCCAATATCTTTTTTCGATCTGAATCTCTCTGCCTGCCATAATCTGGTATCTATAGACCTGTCCTCGAACCATCTGGTAGGAGAGATCCCGCCCTCGTTCTCCAAATGCATTGCATTGCAGAGTCTGAATTTCTCGTCGAATGAATTCGAGGGTACCATCCCTA

Fln Alignment:

GD4IA4403HF8JX___LEQIDISSNGLTGPIPEQF
C0PTA1_______________LKTLDLSANNLTGGIPPEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain