SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77971

Length: 423 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene77971
CCATCTAAGATACATAACCTCAACTATCCTTCCATTACAGTCGCAGAACTGAAGGGAACCGCGATTGTGAAGAGAACGCTGAAAAATGTGGCAGAGGGACATGCGACTTATACAGCGGAGGTGACGGGTCCTCCTGGAATTTTGGTGTCAGTGAATCCCACAGAACTTGAGTTTTCCAAGAAAGGGGAGAAGAAATCTTTCACTATAACATTCAGTCCAAACAATTTTGCAGGTAACTATGTATTTGGGTCCCTATCCTGGAATCATGATCGATTTTCAGTGGTAAGTCCCATTGTTGTGGGTGATGTGTCTGGCAAGCGCGCCTTGAATCACTAACCAACCCACCATTGTTCGATTGATTTTTCACGCATGTGAAAGATGGATGAAATAAAGCAATAAAATGGAAGTTTCCATTTTGATGAG

Ace file of the UniGene sp_v3.0_unigene77971 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Subtilisin-like protease n=1 Tax=Glycine max RepID=Q6WNU4_SOYBN	-	-	2.0e-16	51%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	40%

Source	Gene names
Sma3	SUB1;

Source	GOs	Term	Type	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04160.1	AIR3 Subtilisin-like serine endopeptidase family protein chr2:1401450-1407694 REVERSE LENGTH=772	1.0e-18	47%
RefSeq	Arabidopsis thaliana	NP_565309.2	Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	2.0e-18	47%
RefSeq	Populus trichocarpa	XP_002320540.1	predicted protein [Populus trichocarpa]	7.0e-20	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: your sequence is shorter than subject: 112 - 779

Fln protein: PSKIHNLNYPSITVAELKGTAIVKRTLKNVAEGHATYTAEVTGPPGILVSVNPTELEFSKKGEKKSFTITFSPNNFAGNYVFGSLSWNHDRFSVVSPIVVGDVSGKRALNH*

Protein Length: 113

Fln nts: CCATCTAAGATACATAACCTCAACTATCCTTCCATTACAGTCGCAGAACTGAAGGGAACCGCGATTGTGAAGAGAACGCTGAAAAATGTGGCAGAGGGACATGCGACTTATACAGCGGAGGTGACGGGTCCTCCTGGAATTTTGGTGTCAGTGAATCCCACAGAACTTGAGTTTTCCAAGAAAGGGGAGAAGAAATCTTTCACTATAACATTCAGTCCAAACAATTTTGCAGGTAACTATGTATTTGGGTCCCTATCCTGGAATCATGATCGATTTTCAGTGGTAAGTCCCATTGTTGTGGGTGATGTGTCTGGCAAGCGCGCCTTGAATCACTAA___CCAACCCACCATTGTTCGATTGATTTTTCACGCATGTGAAAGATGGATGAAATAAAGCAATAAAATGGAAGTTTCCATTTTGATGAG

Fln Alignment:

GD4IA4403HAO6M___IHNLNYPSITVAEL---KGTAIVKRTLKN-VAEGHATYTAEVTGPPGILVSVNPTELEFSKKGEKKSFTITFSPNNFA-GNYVFGSLSWNHDRFSVVSPIVVGDV
Q40764_______________ISNMNYPSIAISKLGIKNGSTTISRSVTNFVPEQAPTYKVTIDAPPGLNVKVSPEILHFSKTSKKLSFNVVFTPTNVATKGYAFGTLVWSDGKHNVRSPFAVNMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain