SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77942

Length: 203 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene77942
GGAGTCCAACACACTGATCTCGGACATGACCACCGTGATCTGCCTGGATGACTACCACTCGCTGGACCGCAACGGGCGCAAGAAGGAGAACGTGACAGCCCTGGACCCCAAGGCCCAGAACTTTGACCTGATGTACGAGCAGATCAAGGGCCTGAAGGAGGGCCAGAATGCAGACAAGCCCATCTACAACCACGTGTCGGGTC

Ace file of the UniGene sp_v3.0_unigene77942 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoribulokinase, chloroplastic n=1 Tax=Spinacia oleracea RepID=KPPR_SPIOL	-	-	3.0e-25	82%
FL-Next	sp=Phosphoribulokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Phosphoribulokinase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoribulokinase.	EC:2.7.1.19	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Carbon fixation in photosynthetic organisms	00710		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	At1g32060; CHLREDRAFT_195910; GSVIVT00009034001; GSVIVT00014038001; MICPUCDRAFT_49540; MICPUN_104911; OSJNBa0006A01.23; OSJNba0093F12.5; OSTLU_45513; Os02g0698000; OsI_08574; OsI_17227; OsJ_08032; OsJ_16006; Ot04g02900; P0459B01.11; PHATR_50773; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phosphoribulokinase activity	GO:0008974	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3		GO:0006350	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribulokinase	IPR006082	-	-
Sma3	Phosphoribulokinase/uridine kinase	IPR006083	-	-
Sma3		IPR010990	-	-
Sma3		IPR014765	-	-
Sma3	Transcription factor IIS, N-terminal	IPR017923	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32060.1	PRK phosphoribulokinase chr1:11532668-11534406 FORWARD LENGTH=395	9.0e-30	74%
RefSeq	Arabidopsis thaliana	NP_174486.1	phosphoribulokinase [Arabidopsis thaliana]	1.0e-29	74%
RefSeq	Populus trichocarpa	XP_002303455.1	predicted protein [Populus trichocarpa]	9.0e-31	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC2

Fln msg: Distance to subject end: 243 aas, your sequence is shorter than subject: 67 - 400

Fln protein: ESNTLISDMTTVICLDDYHSLDRNGRKKENVTALDPKAQNFDLMYEQIKGLKEGQNADKPIYNHVSG

Protein Length: 68

Fln nts: GGAGTCCAACACACTGATCTCGGACATGACCACCGTGATCTGCCTGGATGACTACCACTCGCTGGACCGCAACGGGCGCAAGAAGGAGAACGTGACAGCCCTGGACCCCAAGGCCCAGAACTTTGACCTGATGTACGAGCAGATCAAGGGCCTGAAGGAGGGCCAGAATGCAGACAAGCCCATCTACAACCACGTGTCGGGTC

Fln Alignment:

GD4IA4403GSQM3___ESNTLISDMTTVICLDDYHSLDRNGRKKENVTALDPKAQNFDLMYEQIKGLKEGQNADKPIYNHVSG
A9NVC2_______________DSNTLISDTTTVICLDDYHSLDRYGRKDKGVTALDPRANNFDLMYEQVKALKEGKSVMKPIYNHVTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain