SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77927

Length: 278 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene77927
CTGACTGCTTGCCTAACTATTGAGTTCTGCTATGCTTTCGTATTTTTCAGTTTATTAGGTCTAAATCTCTGAACATATAAATCTCTTTCCAGTCTCAGCCTGGTGACTACTACTATACATGTTCCATGAATTAATGGAGTTTGATGAAGGGAAGCGAAGTTGTCGGCGTCGCCTTGCAGGTCACAATGAGCGCCGCAGGAAACCTCAGCATGATCCTATGGGAATAAACTCTGCAAGGCTTCTGCCATCCTTCCATGATAACAGGCTTGGTAGCTATT

Ace file of the UniGene sp_v3.0_unigene77927 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SBP domain containing protein	-	-	4.0e-17	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	LIGULELESS1 protein, putative	-	-	1.148e-10	-

Source	Gene names
Sma3	At1g53160; At1g69170; At1g76580; At2g33810; At2g47070/At2g47080; At3g15270; At3g60030; BoB028L01.130; F12M16.2; F14G6.18; F14M4.9/F14M4.10; F23O10.24; F4N2.13; GSVIVT00002776001; GSVIVT00002800001; GSVIVT00002959001; GSVIVT00017953001; GSVIVT00018616001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	regulation of vegetative phase change	GO:0010321	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3	Squamosa promoter-binding protein	IPR017238	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15270.1	SPL5 squamosa promoter binding protein-like 5 chr3:5140624-5141256 REVERSE LENGTH=181	1.0e-12	74%
RefSeq	Arabidopsis thaliana	NP_188145.1	squamosa promoter-binding-like protein 5 [Arabidopsis thaliana]	1.0e-12	74%
RefSeq	Populus trichocarpa	XP_002314996.1	hypothetical protein POPTRDRAFT_769914 [Populus trichocarpa]	7.0e-13	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 24 aas, your sequence is shorter than subject: 92 - 198

Fln protein: *LLA*LLSSAMLSYFSVY*V*ISEHINLFPVSAW*LLLYMFHELMEFDEGKRSCRRRLAGHNERRRKPQHDPMGINSARLLPSFHDNRLGSY

Protein Length: 93

Fln nts: CTGACTGCTTGCCTAACTATTGAGTTCTGCTATGCTTTCGTATTTTTCAGTTTATTAGGTCTAAATCTCTGAACATATAAATCTCTTTCCAGTCTCAGCCTGGTGACTACTACTATACATGTTCCATGAATTAATGGAGTTTGATGAAGGGAAGCGAAGTTGTCGGCGTCGCCTTGCAGGTCACAATGAGCGCCGCAGGAAACCTCAGCATGATCCTATGGGAATAAACTCTGCAAGGCTTCTGCCATCCTTCCATGATAACAGGCTTGGTAGCTATT

Fln Alignment:

GD4IA4403FXZZO___FHELMEFDEGKRSCRRRLAGHNERRRKPQHD
A9NSA8_______________FHVLEEFDEAKRSCRRRLAGHNERRRKTPSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain