SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77913

Length: 354 nt

UniGene Fasta

>sp_v3.0_unigene77913
CCTTGTTGAACCTAATGCTTCTGTGTGGGGATCTTTGCTTGGTGCTTGCAGAGTTCATGGCAATATAGAGCTAGCTGAGCGAGCAGTAGAACAGCTTATTGAATTAACCCCAGAAAATCCGGGAACTTATGTACTGTTGTCAAATATTTATGCTGCTGCAGGTAGGTGGGATGATGCGGGCAAGGTTAGAAAGAAGATGAAAGATCGGAATGTTAAAAAGGAGCCTGGATGCAGTTGGATTGAGATCCAGAATAAGGTGCATCCATTTATTGTAGGAGATAACTCCCACCCACAAATAGAGGAAATTCATGAAACTTTGGAAACACTGACTTTGACAAATGAAGGCAGCAGGAT

Ace file of the UniGene sp_v3.0_unigene77913

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	3.0e-31	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	8.244e-11	-

Source	Gene names
Sma3	57h21.3; AP22.43; At1g08070; At1g09410; At1g20230; At1g25360; At2g03880; At2g13600; At2g22070; At2g29760; At3g24000; At3g49140; At3g49170; At3g57430; At3g61170; At3g63370; At4g02750; At4g13650; At4g16835; At4g37170; At5g04780; B1080A02.28; C7A10.190; DYW1

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	5.0e-38	62%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-38	62%
RefSeq	Populus trichocarpa	XP_002302000.1	predicted protein [Populus trichocarpa]	8.0e-40	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 91 aas, your sequence is shorter than subject: 117 - 370

Fln protein: LVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKKMKDRNVKKEPGCSWIEIQNKVHPFIVGDNSHPQIEEIHETLETLTLTNEGSR

Protein Length: 118

Fln nts: CCTTGTTGAACCTAATGCTTCTGTGTGGGGATCTTTGCTTGGTGCTTGCAGAGTTCATGGCAATATAGAGCTAGCTGAGCGAGCAGTAGAACAGCTTATTGAATTAACCCCAGAAAATCCGGGAACTTATGTACTGTTGTCAAATATTTATGCTGCTGCAGGTAGGTGGGATGATGCGGGCAAGGTTAGAAAGAAGATGAAAGATCGGAATGTTAAAAAGGAGCCTGGATGCAGTTGGATTGAGATCCAGAATAAGGTGCATCCATTTATTGTAGGAGATAACTCCCACCCACAAATAGAGGAAATTCATGAAACTTTGGAAACACTGACTTTGACAAATGAAGGCAGCAGGAT

Fln Alignment:

GD4IA4403GXQAE___VEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKKMKDRNVKKEPGCSWIEIQNKVHPFIVGDNSHPQ
A9P0W0_______________VEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain