SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77881

Length: 349 nt

UniGene Fasta

>sp_v3.0_unigene77881
GACGAATCTGTGACGAAGCAAAGATGGAGGAATGCTACATGGAGCAGCGTCAGGCCATCCCGGCACTCGGCTTCTACCCGCGCACGGCGATCTCCACGGGCACGACCTTGGTTGCTGTTGAGTACGCGGAGGGCATTGTCATCGGCGTGGACTCTCGGACCTCGACGGGAAACTTCGTCGCGAGCCGCGCCACTGACAAGATCACGCCGGTCACCGACCACCTGATCATTTGCCGATCTGGAAGCGCGGCGGATACGCAGACGATTGCCGATATCGTCAAGTACTACATCGAGGTCTTCTCCGTCATGGAGAACGAGCCAATGTCCGTCTACCGCAGCGCGCAGCTTTA

Ace file of the UniGene sp_v3.0_unigene77881

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type n=4 Tax=Caenorhabditis RepID=Q966I8_CAEEL	-	-	5.0e-35	63%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%

Source	Gene names
Sma3	MICPUCDRAFT_44601; MICPUN_59004; OJ1079_F11.26; OSTLU_39514; OSTLU_43808; Os02g0770000; OsI_09094; OsJ_08530; OsPBA1; Ot14g00030; PHATRDRAFT_6151;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cold-shock protein, DNA-binding	IPR002059	-	-
Sma3	Cold shock protein	IPR011129	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31300.2	PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein chr4:15188927-15190935 FORWARD LENGTH=234	7.0e-25	50%
RefSeq	Arabidopsis thaliana	NP_001190879.1	proteasome subunit beta type-6 [Arabidopsis thaliana]	1.0e-24	50%
RefSeq	Populus trichocarpa	XP_002309021.1	predicted protein [Populus trichocarpa]	3.0e-24	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLJ2

Fln msg: Distance to subject end: 137 aas, your sequence is shorter than subject: 108 - 233

Fln protein: MEECYMEQRQAIPALGFYPRTAISTGTTLVAVEYAEGIVIGVDSRTSTGNFVASRATDKITPVTDHLIICRSGSAADTQTIADIVKYYIEVFSVMENEPMSVYRSAQL

Protein Length: 109

Fln nts: GACGAATCTGTGACGAAGCAAAG_-_ATGGAGGAATGCTACATGGAGCAGCGTCAGGCCATCCCGGCACTCGGCTTCTACCCGCGCACGGCGATCTCCACGGGCACGACCTTGGTTGCTGTTGAGTACGCGGAGGGCATTGTCATCGGCGTGGACTCTCGGACCTCGACGGGAAACTTCGTCGCGAGCCGCGCCACTGACAAGATCACGCCGGTCACCGACCACCTGATCATTTGCCGATCTGGAAGCGCGGCGGATACGCAGACGATTGCCGATATCGTCAAGTACTACATCGAGGTCTTCTCCGTCATGGAGAACGAGCCAATGTCCGTCTACCGCAGCGCGCAGCTTTA

Fln Alignment:

GD4IA4403FT5AX___STGTTLVAVEYAEGIVIGVDSRTSTGNFVASRATDKITPVTDHLIICRSGSAADTQTIADIVKYYIEVFSVMENEPMSVYRSAQL
A9NLJ2_______________SMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAADSQVVSDYVRYFLHQHIIQLGQPATVKVTANL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain