SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77863

Length: 318 nt

UniGene Fasta

>sp_v3.0_unigene77863
GAGCTGGTCTTTGGCGCTGACTCCGCTGCCATCTCGGAGAAGCGCTCAACGACATTGCAGACAATCTCTGGTACCGGTGCCGTGCACTTGGGTGCTCTCTTCCTAGCCAGGTTCTACAAGGGCAACCGCACTGTCTACCTGTCAAATCCCACCTGGGCGAATCACCACCAAATCTTCAAGAACGTCGGCCACTCAATTGATACCTACCCTTATTTCCACAAGGAGACCAAGGGTCTTGATTTCGAGGGCTTCAAGCAGTCTCTCAAGTCTGCTCCTGAGGGATCTGTCTTCGTTCTTCATGCTTGCGCACATAACCCC

Ace file of the UniGene sp_v3.0_unigene77863

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartate aminotransferase n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z7G7_NECH7	-	-	0.0	82%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Aspartate aminotransferase	-	-	3.055e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate transaminase.	EC:2.6.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Cysteine and methionine metabolism	00270	%
Sma3	Arginine and proline metabolism	00330	%
Sma3	Tyrosine metabolism	00350	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AAT; AAT-1; AAT-P1; AAT1; ASP1; AST1; AST3; At2g30970; CHLREDRAFT_174097; CHLREDRAFT_186959; CRAAT1; F7F1.18; GSVIVT00016723001; GSVIVT00032463001; MICPUN_99771; Os01g0760600; OsI_03821; OsJ_03530; PHYPADRAFT_102134; PHYPADRAFT_136815; POPTRDRAFT_819551;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G30970.1	ASP1 aspartate aminotransferase 1 chr2:13179012-13181686 FORWARD LENGTH=430	3.0e-30	50%
RefSeq	Arabidopsis thaliana	NP_180654.1	aspartate aminotransferase [Arabidopsis thaliana]	3.0e-30	50%
RefSeq	Populus trichocarpa	XP_002324997.1	predicted protein [Populus trichocarpa]	4.0e-33	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC5

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 106 - 424

Fln protein: ELVFGADSAAISEKRSTTLQTISGTGAVHLGALFLARFYKGNRTVYLSNPTWANHHQIFKNVGHSIDTYPYFHKETKGLDFEGFKQSLKSAPEGSVFVLHACAHNP

Protein Length: 107

Fln nts: GAGCTGGTCTTTGGCGCTGACTCCGCTGCCATCTCGGAGAAGCGCTCAACGACATTGCAGACAATCTCTGGTACCGGTGCCGTGCACTTGGGTGCTCTCTTCCTAGCCAGGTTCTACAAGGGCAACCGCACTGTCTACCTGTCAAATCCCACCTGGGCGAATCACCACCAAATCTTCAAGAACGTCGGCCACTCAATTGATACCTACCCTTATTTCCACAAGGAGACCAAGGGTCTTGATTTCGAGGGCTTCAAGCAGTCTCTCAAGTCTGCTCCTGAGGGATCTGTCTTCGTTCTTCATGCTTGCGCACATAACCCC

Fln Alignment:

GD4IA4403GQH68___ELVFGADSAAISEKRSTTLQTISGTGAVHLGALFLARFYKGNRTVYLSNPTWANHHQIFKNVGHSIDTYPYFHKETKGLDFEGFKQSLKSAPEGSVFVLHACAHNP
B8LKC5_______________KLILGDGSPAIGEKRVATAQCLSGTGSLRVGAEFLSKHYS-QHIIYIPVPTWGNHPKIFNLGGLSVKTYRYYDPRTSGLDYEGMLEDLHAAPPGAIVLLHACAHNP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain