SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77785

Length: 322 nt

UniGene Fasta

>sp_v3.0_unigene77785
GTGACTCCAAGCGATGTTGGGAAGCTGAATCGCCTGGTAATCCCAAAGCTGTATGCGGAAAAATACTTGCCTATGGACACGGATGCGAAAGAGAAAGGACTGCTTCTCAGCTTTGAAGACAGCACCGGAAAGCTATGGCCATTCCGATACTCATACTGGAATAGCAGCCAAAGCTACGTGCTCACGAAGGGCTGGAGTCGGTTCGTGAAGGAGATGAAACTGAACACGGGAGACATTGTGTCTTTTCACAGAACAATCTGCCAAGGTCCAAATCGACAGCGTCTCTTCATCAGTTGCAGGCATAAGCCTTGCAGTGCTGCTC

Ace file of the UniGene sp_v3.0_unigene77785

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	B3 domain-containing transcription factor NGA1 [Arabidopsis thaliana] sp\|O82799.1\|NGA1_ARATH RecName: Full=B3 domain-containing transcription factor NGA1; AltName: Full=Protein NGATHA 1 gb\|AAC34233.1\| putative RAV-like B3 domain DNA binding protein [Arabi	-	-	4.0e-35	67%
FL-Next	tr=VP1/ABI3-like protein; Callitropsis nootkatensis.	-	-	0.0	38%
Sma3	AP2 domain-containing transcription factor	-	-	3.324e-10	-

Source	Gene names
Sma3	ARF14; ARF31; ARF32; At1g01030; At1g13260; At1g25560; At1g50680; At1g68840; At2g36080; At2g46870; At3g11580; At3g25730; At3g61970; At4g01500; At5g06250; F11O4.9; F14K14.5; F17J6.20; F19D11.25; F21F14.140; F24K9.25; F2J7.3; F9C22.1; GSVIVT00000473001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Xyloglucan fucosyltransferase	IPR004938	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46870.1	NGA1 AP2/B3-like transcriptional factor family protein chr2:19261313-19262245 FORWARD LENGTH=310	8.40779e-45	67%
RefSeq	Arabidopsis thaliana	NP_566089.1	B3 domain-containing transcription factor NGA1 [Arabidopsis thaliana]	9.80909e-45	67%
RefSeq	Populus trichocarpa	XP_002311438.1	AP2 domain-containing transcription factor [Populus trichocarpa]	6.0e-36	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FNS6

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 107 - 794

Fln protein: VTPSDVGKLNRLVIPKLYAEKYLPMDTDAKEKGLLLSFEDSTGKLWPFRYSYWNSSQSYVLTKGWSRFVKEMKLNTGDIVSFHRTICQGPNRQRLFISCRHKPCSAA

Protein Length: 108

Fln nts: GTGACTCCAAGCGATGTTGGGAAGCTGAATCGCCTGGTAATCCCAAAGCTGTATGCGGAAAAATACTTGCCTATGGACACGGATGCGAAAGAGAAAGGACTGCTTCTCAGCTTTGAAGACAGCACCGGAAAGCTATGGCCATTCCGATACTCATACTGGAATAGCAGCCAAAGCTACGTGCTCACGAAGGGCTGGAGTCGGTTCGTGAAGGAGATGAAACTGAACACGGGAGACATTGTGTCTTTTCACAGAACAATCTGCCAAGGTCCAAATCGACAGCGTCTCTTCATCAGTTGCAGGCATAAGCCTTGCAGTGCTGCTC

Fln Alignment:

GD4IA4403F2QOY___SDVGKLNRLVIPKLYAEKYLPMDTDAKEKGLLLSFED-STGKLWPFRYSYW--NSSQSYVLTKGWSRFVKEMKLNTGDIV
Q9FNS6_______________SDVGNLGRIVLPKKEAETHLP-ELEARD-GISIAMEDIVTSRVWNMRYRFWPNNKSRMYLL-ENTGDFVRSNGLQEGDFI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain