SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77762

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene77762
CTAAGTCTGGAAGGCGTGGTGATCCTGCCTGGCCTGCTAAAGTTATCGATCCAATCCAAGAGGCTCCAGATGCAGTTTTGAGTGTTTGTGTTCCAGGGCGGTTATGCGTTATGTTTTTTGGCCATTCTTCGGGAAAAAGGAAAGAGAGGGATTATGCGTGGGTGAGGCAAGGGATGATTTTTCCATTTATGGAGTATATGGAAAAATTTCAGGGTCAAACGGAGCTAAATAAGAGTAAGCCTAGTGACTTTAAATTGGCAATCGAAGAGGCAATTCTAGCAGAATATGGCTTTATGGATCTTGAAGAGTACCCTCGAAATGGTACCTTGAAACAGGCAG

Ace file of the UniGene sp_v3.0_unigene77762

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] sp\|Q8GZ42.1\|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5	-	-	2.0e-27	58%
FL-Next	sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	Trithorax, putative	-	-	1.134e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	1.27e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		1.27e-13	%

Source	Gene names
Sma3	ATX3; ATX4; ATX5; At3g61740; At4g27910; At5g53430; F15G16.130; GSVIVT00027049001; GSVIVT00037113001; MYN8.4; Os01g0218800; Os01g0218900; OsI_00917; OsI_00918; OsJ_00898; P0489G09.14; P0489G09.15; PHYPADRAFT_145070; POPTRDRAFT_250990; POPTRDRAFT_421736; PO

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PWWP	IPR000313	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Post-SET domain	IPR003616	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G53430.1	SDG29, SET29, ATX5 SET domain group 29 chr5:21677623-21683166 FORWARD LENGTH=1043	2.0e-33	58%
RefSeq	Arabidopsis thaliana	NP_200155.2	histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana]	3.0e-33	58%
RefSeq	Populus trichocarpa	XP_002302629.1	hypothetical protein POPTRDRAFT_755392 [Populus trichocarpa]	1.0e-35	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GZ42

Fln msg: Distance to subject end: 704 aas, your sequence is shorter than subject: 112 - 1043

Fln protein: KSGRRGDPAWPAKVIDPIQEAPDAVLSVCVPGRLCVMFFGHSSGKRKERDYAWVRQGMIFPFMEYMEKFQGQTELNKSKPSDFKLAIEEAILAEYGFMDLEEYPRNGTLKQA

Protein Length: 113

Fln nts: CTAAGTCTGGAAGGCGTGGTGATCCTGCCTGGCCTGCTAAAGTTATCGATCCAATCCAAGAGGCTCCAGATGCAGTTTTGAGTGTTTGTGTTCCAGGGCGGTTATGCGTTATGTTTTTTGGCCATTCTTCGGGAAAAAGGAAAGAGAGGGATTATGCGTGGGTGAGGCAAGGGATGATTTTTCCATTTATGGAGTATATGGAAAAATTTCAGGGTCAAACGGAGCTAAATAAGAGTAAGCCTAGTGACTTTAAATTGGCAATCGAAGAGGCAATTCTAGCAGAATATGGCTTTATGGATCTTGAAGAGTACCCTCGAAATGGTACCTTGAAACAGGCAG

Fln Alignment:

GD4IA4403GTL65___KSGRRGDPAWPAKVIDPIQEAPDAVLSVCVPGRLCVMFFGHSSGKRKERDYAWVRQGMIFPFMEYMEKFQGQTELNKSKPSDFKLAIEEAILAEYGFMD
Q8GZ42_______________KSGRN-EPFWPAIVIDPMTQAPELVLRSCIPDAACVMFFGHS-GTENERDYAWVRRGMIFPFVDYVERLQEQSELRGCNPRDFQMALEEALLADQGFTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain