SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77713

Length: 482 nt

UniGene Fasta

>sp_v3.0_unigene77713
AGGATCTGTTCAAATGGCATATGCGATCTCAGATGATGATGCCAAAAATGCACCAAAACCTATCAAAGGCGAAGATTCATATGTAAAGGAATTAACCCTCAAGGGTAAAAATTATCATCTCTACGTTCACAGCTATTTGCGTTATGGCTTGTTGGCAGCCCGTGCAGAGATTCTAAAAGCTACGATGGATAGCGATTCTGCTTGCATTCAGCTCTTTTTCCCGCTCGATTAATTCCATTTTCCGTCAAAAATTTGGAAATTTCTGTCTGGCAACGCATCCTCTAATTCCCTTGTGGTTAAATCGGTCGAGCTGGAGTCTGCAGAGGGGGCATTGCAGGCCTTCAAGCCGCCATTGAATACCCAGATCCGTTATCGTACGAGCTCGTCAATAGAGCTGGAGAACCAGCATCTGTCATCTGACGGAGAGGAGACCGATCTCGAGGAGAAGATGAAGAGAATGCGGCAGGAGACGGTGACAGAAG

Ace file of the UniGene sp_v3.0_unigene77713

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleoside-triphosphatase n=1 Tax=Arabidopsis thaliana RepID=F4JWK8_ARATH	-	-	4.0e-22	72%
FL-Next	sp=Nucleoside-triphosphatase; Pisum sativum (Garden pea).	-	-	0.0	59%
Sma3	Apyrase	-	-	6.31e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	Nucleoside-triphosphatase.	EC:3.6.1.15	-	3.985e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		3.985e-08	%
Sma3	Thiamine metabolism	00730		3.985e-08	%
Sma3	Metabolic pathways	01100		3.985e-08	%
Sma3	Apyrase.	EC:3.6.1.5	-	5.18e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		5.18e-16	%
Sma3	Pyrimidine metabolism	00240		5.18e-16	%

Source	Gene names
Sma3	APY1; APY2; ATP diphosphohydrolase; At3g04080; At5g18280; Atapy1; Atapy2; GSVIVT00034786001; LNP; LOC_Os03g21120; LOC_Os11g25260; LOC_Os11g25330; LOC_Os12g02980; OSJNBa0060O17.4; OSJNBb0014I10.10; Os07g0682800; Os11g0439600; Os11g0440200; Os12g0123500; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	pollen germination	GO:0009846	Biological Process	-
Sma3	mRNA transport	GO:0051028	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside phosphatase GDA1/CD39	IPR000407	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G18280.2	-	4.0e-27	72%
RefSeq	Arabidopsis thaliana	NP_197329.4	nucleoside-triphosphatase [Arabidopsis thaliana]	4.0e-27	72%
RefSeq	Populus trichocarpa	XP_002319141.1	predicted protein [Populus trichocarpa]	1.0e-22	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P52914

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 97 aas, your sequence is shorter than subject: 77 - 455

Fln protein: GSVQMAYAISDDDAKNAPKPIKGEDSYVKELTLKGKNYHLYVHSYLRYGLLAARAEILKATMDSDSACIQLFFPLD*

Protein Length: 78

Fln nts: AGGATCTGTTCAAATGGCATATGCGATCTCAGATGATGATGCCAAAAATGCACCAAAACCTATCAAAGGCGAAGATTCATATGTAAAGGAATTAACCCTCAAGGGTAAAAATTATCATCTCTACGTTCACAGCTATTTGCGTTATGGCTTGTTGGCAGCCCGTGCAGAGATTCTAAAAGCTACGATGGATAGCGATTCTGCTTGCATTCAGCTCTTTTTCCCGCTCGATTAATTCCATTTTCCGTCAAAAATTTGGAAATTTCTGTCTGGCAACGCATCCTCTAATTCCCTTGTGGTTAAATCGGTCGAGCTGGAGTCTGCAGAGGGGGCATTGCAGGCCTTCAAGCCGCCATTGAATACCCAGATCCGTTATCGTACGAGCTCGTCAATAGAGCTGGAGAACCAGCATCTGTCATCTGACGGAGAGGAGACCGATCTCGAGGAGAAGATGAAGAGAATGCGGCAGGAGACGGTGACAGAAG

Fln Alignment:

GD4IA4403GQAR8___GSVQMAYAISDDDAKNAPKPIKGEDSYVKELTLKGKNYHLYVHSYLRYGLLAARAEILKATMDSDSACI
P52914_______________GSVQMAYAVSKKTAKNAPKVADGDDPYIKKVVLKGIPYDLYVHSYLHFGREASRAEILKLTPRSPNPCL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain