SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77652

Length: 366 nt

UniGene Fasta

>sp_v3.0_unigene77652
AGTTTTCATGGCCACATTCCCTATCAATTGGGAAGTCTCTTTCGCCTAAAAATAGCTTATCTTGTCTCGGAATCAGCTCCAAGGTTCCATTCCGTCATCTGTGGGTATGTGCCGCAGTCTGCAGAGGTTGTCTATGTCCCGTAACAATCTCACAGGAAACGTTCCTGCAGGACTGTGCCTTCTCCCCAAGTTACAATTCTTTAACTTGGAAATTAACAATTTGACGGGTGCAATCCCGCCCTGCTTGGGGAACATATCCTCTTTGCACTTCATAAATTTGTGCAACAACAACCTTCACGGTAGTGTTCCTCCGGAATTAGGTATGCTAAGCCAGCTAAGCTTTATACTTCTCTGTAATAACCATCT

Ace file of the UniGene sp_v3.0_unigene77652

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Marchantia polymorpha RepID=A7VM29_MARPO	-	-	3.0e-18	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Gene names
Sma3	CLL4A; PHYPADRAFT_211131;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26330.1	ER, QRP1 Leucine-rich receptor-like protein kinase family protein chr2:11208367-11213895 REVERSE LENGTH=976	7.0e-20	45%
RefSeq	Arabidopsis thaliana	NP_180201.1	LRR receptor-like serine/threonine-protein kinase ERECTA [Arabidopsis thaliana]	9.0e-20	45%
RefSeq	Populus trichocarpa	XP_002331903.1	predicted protein [Populus trichocarpa]	2.0e-22	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 309 aas, your sequence is shorter than subject: 121 - 551

Fln protein: VFMATFPINWEVSFA*K*LILSRNQLQGSIPSSVGMCRSLQRLSMSRNNLTGNVPAGLCLLPKLQFFNLEINNLTGAIPPCLGNISSLHFINLCNNNLHGSVPPELGMLSQLSFILLCNNH

Protein Length: 122

Fln nts: AGTTTTCATGGCCACATTCCCTATCAATTGGGAAGTCTCTTTCGCCTAAAAATAGCTTATCTTGTCTCGGAATCAGCTCCAAGGTTCCATTCCGTCATCTGTGGGTATGTGCCGCAGTCTGCAGAGGTTGTCTATGTCCCGTAACAATCTCACAGGAAACGTTCCTGCAGGACTGTGCCTTCTCCCCAAGTTACAATTCTTTAACTTGGAAATTAACAATTTGACGGGTGCAATCCCGCCCTGCTTGGGGAACATATCCTCTTTGCACTTCATAAATTTGTGCAACAACAACCTTCACGGTAGTGTTCCTCCGGAATTAGGTATGCTAAGCCAGCTAAGCTTTATACTTCTCTGTAATAACCATCT

Fln Alignment:

GD4IA4403G71JP___K*LILSRNQLQGSIPSSVGMCRSLQRLSMSRNNLTGNVPAGLCLLPKLQFFNLEINNLTGAIPPCLGNISSLHFINLCNNNLHGSVPPEL-GMLSQLSFILLCNN
B8LRW5_______________KFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQLHGSIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLLLDLQLHANQLTGHIPWEFGGRLSQLENLFLWGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain