SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77466

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene77466
GCCAAATCAAAGACCAGCTGCTCTGCGTGAGCCTCTTCGGTGTTCGACAGAAAAGCGGCCAAGACGGCTGACAGCGACAACCGCGGTTTACTGTTGCTGATCGTAGTAATTCCAGCTATTGCCTGGGTTTTGTATAACATTCTCCAGCCTGCACTTAATCAGATCAACAAGATGCGTTCAGGATAGAAGATCAACCATGCATTCTCTTCTTTAGTTATACTTAAGTAGGAAA

Ace file of the UniGene sp_v3.0_unigene77466

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Photosystem II core complex proteins psbY	-	-	5.925e-14	-

Source	Gene names
Sma3	At1g67740; F12A21.13; GSVIVT00030701001; OsJ_25851; POPTRDRAFT_726168; POPTRDRAFT_820850; PSBY; RCOM_1082890;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	photosystem II	GO:0009523	Cellular Component	-
Sma3	chloroplast stromal thylakoid	GO:0009533	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II PsbY	IPR009388	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQA0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 62 - 206

Fln protein: AKSKTSCSA*ASSVFDRKAAKTADSDNRGLLLLIVVIPAIAWVLYNILQPALNQINKMRSG*

Protein Length: 63

Fln nts: GCCAAATCAAAGACCAGCTGCTCTGCGTGAGCCTCTTCGGTGTTCGACAGAAAAGCGGCCAAGACGGCTGACAGCGACAACCGCGGTTTACTGTTGCTGATCGTAGTAATTCCAGCTATTGCCTGGGTTTTGTATAACATTCTCCAGCCTGCACTTAATCAGATCAACAAGATGCGTTCAGGATAG___AAGATCAACCATGCATTCTCTTCTTTAGTTATACTTAAGTAGGAAA

Fln Alignment:

GD4IA4403HD7F4___VFDRKAAKTADSDNRGXXXXXXXXXXXXXXXYNILQPALNQINKMRSG
A9NQA0_______________VFDL-AAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain