SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77452

Length: 317 nt

UniGene Fasta

>sp_v3.0_unigene77452
CAACCCCAGCCAAAGAAGGATAACGTAGCAGCCATGGCCGCGTCCCTCGCAACAGGATCCGCGCTACAAGCCGCGGCCACGCTTCTCCAACCAACAAAGCTCAGCGTCACGCGTAGCTCCTCCAGGCTATCGTCCTCGTCCCCGCATGTCTCAAGGGCCTTCGGTGACGAGGAAGAGCTGGTTAAGGAGAATATCAAGGACGTATCGGCGTCCAAGGGAACTATCACCCTCAGCGTCAGCAAGAGTAAGCCCGAAACGGGCGAGGTGATTGGTGTGTTCGAGAGCCTTCAGCCCTCCGACACCGATTTGGGCTCCAA

Ace file of the UniGene sp_v3.0_unigene77452

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG	-	-	9.0e-18	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	OEE1	-	-	5.659e-34	-

Source	Gene names
Sma3	At3g50820; At5g66570; B1080D07.27; F18B3.100; GSVIVT00013467001; GSVIVT00014701001; K1F13.25; MICPUCDRAFT_48994; OEE1; Os01g0501800; OsI_02088; OsJ_01921; PHYPADRAFT_177617; PHYPADRAFT_182810; PHYPADRAFT_200318; PHYPADRAFT_225004; POPTRDRAFT_716206; POPTR

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast thylakoid lumen	GO:0009543	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	poly(U) RNA binding	GO:0008266	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	photoinhibition	GO:0010205	Biological Process	-
Sma3	photosystem II assembly	GO:0010207	Biological Process	-
Sma3	regulation of protein dephosphorylation	GO:0035304	Biological Process	-
Sma3	photosystem II stabilization	GO:0042549	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II PsbO, manganese-stabilising	IPR002628	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66570.1	PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 PS II oxygen-evolving complex 1 chr5:26568744-26570124 FORWARD LENGTH=332	2.0e-21	82%
RefSeq	Arabidopsis thaliana	NP_201458.1	oxygen-evolving enhancer protein 1-1 [Arabidopsis thaliana]	3.0e-21	82%
RefSeq	Populus trichocarpa	XP_002307234.1	hypothetical protein POPTRDRAFT_716206 [Populus trichocarpa]	4.0e-21	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRZ1

Fln msg: Distance to subject end: 18 aas, your sequence is shorter than subject: 105 - 341

Fln protein: QPQPKKDNVAAMAASLATGSALQAAATLLQPTKLSVTRSSSRLSSSSPHVSRAFGDEEELVKENIKDVSASKGTITLSVSKSKPETGEVIGVFESLQPSDTDLGS

Protein Length: 106

Fln nts: CAACCCCAGCCAAAGAAGGATAACGTAGCAGCCATGGCCGCGTCCCTCGCAACAGGATCCGCGCTACAAGCCGCGGCCACGCTTCTCCAACCAACAAAGCTCAGCGTCACGCGTAGCTCCTCCAGGCTATCGTCCTCGTCCCCGCATGTCTCAAGGGCCTTCGGTGACGAGGAAGAGCTGGTTAAGGAGAATATCAAGGACGTATCGGCGTCCAAGGGAACTATCACCCTCAGCGTCAGCAAGAGTAAGCCCGAAACGGGCGAGGTGATTGGTGTGTTCGAGAGCCTTCAGCCCTCCGACACCGATTTGGGCTCCAA

Fln Alignment:

GD4IA4403FSEQN___GDEEELVKENIKDVSASKGTITLSVSKSKPETGEVIGVFESLQPSDTDLGS
C0PRZ1_______________GDEEELVKENIKDVSASKGEITFSVSKSKPDTGEVIGVFESLQPSDTDLGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain