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UniGene Name: sp_v3.0_unigene77401
Length: 236 nt
 UniGene Fasta
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| >sp_v3.0_unigene77401
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Ace file of the UniGene sp_v3.0_unigene77401
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
|---|
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Malate dehydrogenase n=10 Tax=Pinaceae RepID=A9NVT9_PICSI | - | - | 5.0e-13 | 100% |
| FL-Next | sp=Malate dehydrogenase; Pinus pinaster (Maritime pine). | - | - | 0.0 | 100% |
| Sma3 | Malate dehydrogenase | - | - | 2.135e-38 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Malate dehydrogenase. | EC:1.1.1.37 | - | 0.0 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Citrate cycle (TCA cycle) | 00020 | 0.0 | % | |
| Sma3 | Pyruvate metabolism | 00620 | 0.0 | % | |
| Sma3 | Glyoxylate and dicarboxylate metabolism | 00630 | 0.0 | % | |
| Sma3 | Methane metabolism | 00680 | 0.0 | % | |
| Sma3 | Carbon fixation in photosynthetic organisms | 00710 | 0.0 | % | |
| Sma3 | Carbon fixation pathways in prokaryotes | 00720 | 0.0 | % | |
| Sma3 | Biosynthesis of phenylpropanoids | 01061 | 0.0 | % | |
| Sma3 | Biosynthesis of terpenoids and steroids | 01062 | 0.0 | % | |
| Sma3 | Biosynthesis of alkaloids derived from shikimate pathway | 01063 | 0.0 | % | |
| Sma3 | Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid | 01064 | 0.0 | % | |
| Sma3 | Biosynthesis of alkaloids derived from histidine and purine | 01065 | 0.0 | % | |
| Sma3 | Biosynthesis of alkaloids derived from terpenoid and polyketide | 01066 | 0.0 | % | |
| Sma3 | Biosynthesis of plant hormones | 01070 | 0.0 | % | |
| Sma3 | Metabolic pathways | 01100 | 0.0 | % | |
| Sma3 | Biosynthesis of secondary metabolites | 01110 | 0.0 | % |
| Source | Gene names |
|---|---|
| Sma3 | At5g43330; At5g56720; GSVIVT00019169001; GSVIVT00028594001; GSVIVT00028595001; IhMDH1; LOC_Os10g33800; MDH; MDH1; MDH2; MWF20.2; NAD-MDH; NR1; OSJNBa0055P24.3; Os10g0478200; OsI_34036; OsI_34038; OsJ_31897; PHYPADRAFT_195276; POPTRDRAFT_551994; POPTRDRAFT |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
| Sma3 | GO:0008415 | Molecular Function | 0.0 | - | |
| Sma3 | malate dehydrogenase activity | GO:0016615 | Molecular Function | 0.0 | - |
| Sma3 | L-malate dehydrogenase activity | GO:0030060 | Molecular Function | 0.0 | - |
| Sma3 | carbohydrate metabolic process | GO:0005975 | Biological Process | 0.0 | - |
| Sma3 | glycolysis | GO:0006096 | Biological Process | 0.0 | - |
| Sma3 | tricarboxylic acid cycle | GO:0006099 | Biological Process | 0.0 | - |
| Sma3 | malate metabolic process | GO:0006108 | Biological Process | 0.0 | - |
| Sma3 | oxidation-reduction process | GO:0055114 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Lactate/malate dehydrogenase, N-terminal | IPR001236 | - | 0.0 | - |
| Sma3 | Malate dehydrogenase, active site | IPR001252 | - | 0.0 | - |
| Sma3 | L-lactate/malate dehydrogenase | IPR001557 | - | 0.0 | - |
| Sma3 | Malate dehydrogenase, type 2 | IPR010945 | - | 0.0 | - |
| Sma3 | Malate dehydrogenase, NAD-dependent, cytosolic | IPR011274 | - | 0.0 | - |
| Sma3 | Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | IPR015955 | - | 0.0 | - |
| Sma3 | NAD(P)-binding domain | IPR016040 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT1G04410.1 | Lactate/malate dehydrogenase family protein chr1:1189418-1191267 REVERSE LENGTH=332 | 2.0e-13 | 78% |
| RefSeq | Arabidopsis thaliana | NP_171936.1 | malate dehydrogenase [Arabidopsis thaliana] | 3.0e-13 | 78% |
| RefSeq | Populus trichocarpa | XP_002300506.1 | predicted protein, partial [Populus trichocarpa] | 3.0e-13 | 77% |
| Full-Lengther Next Prediction |
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Fln status: Misassembled
Fln database: coniferopsida.fasta
Fln subject: Q6RY59
Fln msg: Coding sequence with some errors, ERROR#1, contains sense and antisense hits!!!, putative chimeric sequence,
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
