SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77374

Length: 393 nt

UniGene Fasta

>sp_v3.0_unigene77374
TACGACATCGCACCCAAGGTTCTCCTTGAGGCTGGCAAGGCCAAGAACCCATGGCCTAACGTCGATGCTCACTCTGGTGTGCTTCTCACCTACTATGGTCTCTCCCAGATGCAATTCTACACCGTCTTGTTCGGTGTCTCCCGTGCCTTCGGTGTTGCCGCTCAGCTCTGCTGGGACCGTGCCCTCGGTGCTCCTCTCGAGCGCCCGAAGAGCTACTCGTCTGCTGCCATCAAGAAGATGTTCGAGGGCAAGCCATGAGTCTGACGTTGGTTCTGAATTCGTAGTGGACGTAGTTTACGGATGTTGTGTCGCCTATGCCTTTGTTCGCTTTTATCTGGTTTCATCTCTAGACTCTAATCAGATAAAAGCGAACAAAGGCATAGGCGACACAAC

Ace file of the UniGene sp_v3.0_unigene77374

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Citrate synthase n=1 Tax=Schizophyllum commune H4-8 RepID=D8Q525_SCHCM	-	-	1.0e-37	90%
FL-Next	sp=Citrate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Citrate synthase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Citrate (Si)-synthase.	EC:2.3.3.1	-	4.445e-21	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	4.445e-21	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	4.445e-21	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.445e-21	%
Sma3	Biosynthesis of terpenoids and steroids	01062	4.445e-21	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.445e-21	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	4.445e-21	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	4.445e-21	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	4.445e-21	%
Sma3	Biosynthesis of plant hormones	01070	4.445e-21	%
Sma3	Metabolic pathways	01100	4.445e-21	%
Sma3	Biosynthesis of secondary metabolites	01110	4.445e-21	%

Source	Gene names
Sma3	At2g44350; At3g60100; CHLREDRAFT_194915; CIS1; CIS2; CIT; CS; CSN1; CSY4; CSY5; F4I1.16; GSVIVT00003727001; LOC_Os11g33240; MCSI; MICPUCDRAFT_43905; MICPUN_77978; OSTLU_24535; Os02g0194100; Os11g0538900; OsI_06215; OsI_36380; OsJ_05734; OsJ_34145; Ot05g01

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	citrate (Si)-synthase activity	GO:0004108	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	GO:0046912	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	cellular carbohydrate metabolic process	GO:0044262	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Citrate synthase-like	IPR002020	-	-
Sma3	Citrate synthase, eukaryotic	IPR010109	-	-
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60100.1	CSY5 citrate synthase 5 chr3:22192888-22196246 FORWARD LENGTH=464	2.0e-31	70%
RefSeq	Arabidopsis thaliana	NP_191569.2	citrate synthase 5 [Arabidopsis thaliana]	3.0e-31	70%
RefSeq	Populus trichocarpa	XP_002330895.1	predicted protein [Populus trichocarpa]	4.0e-31	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL1

Fln msg: your sequence is shorter than subject: 86 - 477

Fln protein: YDIAPKVLLEAGKAKNPWPNVDAHSGVLLTYYGLSQMQFYTVLFGVSRAFGVAAQLCWDRALGAPLERPKSYSSAAIKKMFEGKP*

Protein Length: 87

Fln nts: TACGACATCGCACCCAAGGTTCTCCTTGAGGCTGGCAAGGCCAAGAACCCATGGCCTAACGTCGATGCTCACTCTGGTGTGCTTCTCACCTACTATGGTCTCTCCCAGATGCAATTCTACACCGTCTTGTTCGGTGTCTCCCGTGCCTTCGGTGTTGCCGCTCAGCTCTGCTGGGACCGTGCCCTCGGTGCTCCTCTCGAGCGCCCGAAGAGCTACTCGTCTGCTGCCATCAAGAAGATGTTCGAGGGCAAGCCATGA___GTCTGACGTTGGTTCTGAATTCGTAGTGGACGTAGTTTACGGATGTTGTGTCGCCTATGCCTTTGTTCGCTTTTATCTGGTTTCATCTCTAGACTCTAATCAGATAAAAGCGAACAAAGGCATAGGCGACACAAC

Fln Alignment:

GD4IA4403GED53___YDIAPKVLLEAGKAKNPWPNVDAHSGVLLTYYGLSQMQFYTVLFGVSRAFGVAAQLCWDRALGAPLERPKS
B8LLL1_______________FEVVPPILLELGKVKNPWPNVDAHSGVLLNHFGLSEDRFFTVLFGVSRSLGTLSQLIWDRALGLPLERPKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain