SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77345

Length: 430 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene77345
GAAAAAATGGTTGCTTTGAAGTTGCAGAAGCGCCTAGCGGCCAGTGTGCTGGGATGTGGTAAAAGGAAAGTTTGGTTGGACCCGAACGAAATCAACGAGATCCACAATGCCAATTCTCGCAATAACCTGCGGAAGTTGGTGAAGGATGGGTATGTCATCAAGAAACCCAACGCCATCCACTCTCGTGCTCGCGTTAACAAACGCTTGGAGGCCAAGAGGAAAGGTCGTCACATGGGTACTGGTAAGCGAAAGGGTACACGCGATGCTCGTTTCCCCAGTAAGATCATCTGGATGCGTCGTATGCGAGTTTTGCGACGTCTTCTCCGCAAATATCGAGAAAGTCAGAAGATCGACAAATACCTTTATCATGAATTGTATTTGAAAGCTAAGGGTAGTGGTTTTAAAAACAAGCGTGTATTGATGGAGCATA

Ace file of the UniGene sp_v3.0_unigene77345 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein L19 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NC86_PHYIT	-	-	70%
FL-Next	sp=Ribosomal protein L19; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Sma3	Ribosomal protein L19	-	-	-

Source	Gene names
Sma3	At1g02780; At3g16780; At4g02230; CHLREDRAFT_195590; EMB2386; F22D16.23; GSVIVT00017864001; GSVIVT00028043001; GSVIVT00033050001; GSVIVT00033052001; LOC_Os03g21940; LOC_Os03g38260; MGL6.25; MICPUCDRAFT_49436; MICPUN_112659; OSJNBa0083K01.10; OSJNBb0016P23.

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L19/L19e	IPR000196	-	-
Sma3	Ribosomal protein L19/L19e, domain 1	IPR015972	-	-
Sma3	Ribosomal protein L19/L19e, domain 3	IPR015974	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16780.1	Ribosomal protein L19e family protein chr3:5708982-5710249 FORWARD LENGTH=209	70%
RefSeq	Arabidopsis thaliana	NP_188300.1	60S ribosomal protein L19-2 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002329697.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTG5

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 141 - 177

Fln protein: MVALKLQKRLAASVLGCGKRKVWLDPNEINEIHNANSRNNLRKLVKDGYVIKKPNAIHSRARVNKRLEAKRKGRHMGTGKRKGTRDARFPSKIIWMRRMRVLRRLLRKYRESQKIDKYLYHELYLKAKGSGFKNKRVLMEH

Protein Length: 142

Fln nts: GAAAAA_-_ATGGTTGCTTTGAAGTTGCAGAAGCGCCTAGCGGCCAGTGTGCTGGGATGTGGTAAAAGGAAAGTTTGGTTGGACCCGAACGAAATCAACGAGATCCACAATGCCAATTCTCGCAATAACCTGCGGAAGTTGGTGAAGGATGGGTATGTCATCAAGAAACCCAACGCCATCCACTCTCGTGCTCGCGTTAACAAACGCTTGGAGGCCAAGAGGAAAGGTCGTCACATGGGTACTGGTAAGCGAAAGGGTACACGCGATGCTCGTTTCCCCAGTAAGATCATCTGGATGCGTCGTATGCGAGTTTTGCGACGTCTTCTCCGCAAATATCGAGAAAGTCAGAAGATCGACAAATACCTTTATCATGAATTGTATTTGAAAGCTAAGGGTAGTGGTTTTAAAAACAAGCGTGTATTGATGGAGCATA

Fln Alignment:

GD4IA4403HI6JK___MVALKLQKRLAASVLGCGKRKVWLDPNEINEIHNANSRNNLRKLVKDGYVIKKPNAIHSRARVNKRLEAKRKGRHMGTGKRKGTRDARFPSKIIWXXXXXXXXXXXRKYRESQKIDKYLYHELYLKAKGSGFKNKRVLME
A9NTG5_______________MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIRKPMKIHSRARARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain