SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77323

Length: 442 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene77323
TAATGATGAAATGTGTTATTCCCGTCATTATGGCTGGTATCATTGCTATCTATGGTCTCGTCGTCTCTGTCTTGATCTCTGGAAACCTCGCTCCGAAGATGTCCCTCTTCCAAGGCTTCGTCCAGCTTGGTGCCGGTCTCTCCGTCGGTCTTGCCGGTCTCTCTGCTGGTTTCGCTATTGGAATTGTCGGTGACGCCGGTGTAAGAGGTTATGCGCAGCAACCAAGGCTCTTCGTCGGAATGCTTCTTATCCTGATTTTCGCCGAAGTCTTGGGTCTCTATGGCCTCATTGTTGCCCTCATTATGAACACCAAGGCTGATGGTGTCTCTGTGTGCGACTAATGGCTGAGAGAAAAGTCACGATGTAGAAATATCAGATTAATGCGAAATTTCTGCTTGCTCTTCGCCGATTGTCCCTGCTTTCACTCGAGTGTGATCTGTCC

Ace file of the UniGene sp_v3.0_unigene77323 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar ATP synthase proteolipid subunit n=4 Tax=Pucciniales RepID=E3KJ11_PUCGT	-	-	2.0e-32	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Vacuolar ATP synthase	-	-	1.312e-07	-

Source	Gene names
Sma3	ATPvL1; AVA-P1; AVA-P2; AVA-P3; AVA-P4; AVA-P5; AVAP1; AVAP2; AVAP3; AVAP4; AVAP5; At1g19910; At1g75630; At2g16510; At4g34720; At4g38920; BV-16/1; BVA-16/2; CHLREDRAFT_134189; CVA16-2; CVA16-4; Cit-VATP c-1; Cit-VATP c-2; Cit-VATP c-3; CitVATP c-1; CitVAT

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34720.1	AVA-P1, VHA-C1, ATVHA-C1 ATPase, F0/V0 complex, subunit C protein chr4:16568223-16569165 REVERSE LENGTH=164	3.0e-29	61%
RefSeq	Arabidopsis thaliana	NP_195603.1	V-type H+-transporting ATPase 16kDa proteolipid subunit [Arabidopsis thaliana]	4.0e-29	61%
RefSeq	Populus trichocarpa	XP_002306142.1	predicted protein [Populus trichocarpa]	4.0e-29	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL02

Fln msg: your sequence is shorter than subject: 113 - 165

Fln protein: MMKCVIPVIMAGIIAIYGLVVSVLISGNLAPKMSLFQGFVQLGAGLSVGLAGLSAGFAIGIVGDAGVRGYAQQPRLFVGMLLILIFAEVLGLYGLIVALIMNTKADGVSVCD*

Protein Length: 114

Fln nts: TAATGATGAAATGTGTTATTCCCGTCATTATGGCTGGTATCATTGCTATCTATGGTCTCGTCGTCTCTGTCTTGATCTCTGGAAACCTCGCTCCGAAGATGTCCCTCTTCCAAGGCTTCGTCCAGCTTGGTGCCGGTCTCTCCGTCGGTCTTGCCGGTCTCTCTGCTGGTTTCGCTATTGGAATTGTCGGTGACGCCGGTGTAAGAGGTTATGCGCAGCAACCAAGGCTCTTCGTCGGAATGCTTCTTATCCTGATTTTCGCCGAAGTCTTGGGTCTCTATGGCCTCATTGTTGCCCTCATTATGAACACCAAGGCTGATGGTGTCTCTGTGTGCGACTAA___TGGCTGAGAGAAAAGTCACGATGTAGAAATATCAGATTAATGCGAAATTTCTGCTTGCTCTTCGCCGATTGTCCCTGCTTTCACTCGAGTGTGATCTGTCC

Fln Alignment:

GD4IA4403G1VHC___MMKCVIPVIMAGIIAIYGLVVSVLISGNLAPKMS---LFQGFVQXXXXXXXXXXXXXXXXAIGIVGDAGVRGYAQQPRLFVGMLLILIFAEVLGLYGLIVALIMNTKA
A9NL02_______________VMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLSGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain