SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77309

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene77309
CCAGAAGAGGTTGCCGATGTTAAGTACGTAAGCAAAGAGCAGTTGAAGGCTTTCATCAAGGTTGTTAACTACAACCACATCATGCCCACCAGGTATAGTTTGGATGTGGATTTGAAGAATGTAGTTACTTTTGATAAACTGGAGACCCGCGATAAGAAGGTGGCGGCGCTAAAGGGAGTAAAAGCTTCCTTTGAGGAGAGGTTC

Ace file of the UniGene sp_v3.0_unigene77309

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L27 n=2 Tax=Picea sitchensis RepID=A9NQ84_PICSI	-	-	3.0e-23	90%
FL-Next	sp=60S ribosomal protein L27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	60S ribosomal protein L27	-	-	0.0	-

Source	Gene names
Sma3	At2g32220; At3g22230; At4g15000; F22D22.3; GSVIVT00025743001; GSVIVT00030172001; LOC_Os10g41470; MICPUCDRAFT_34421; MICPUN_107054; MKA23.13; OJ1115_D03.9; OSJNBa0018M09.22; OSJNBa0027P10.10; Os02g0284600; Os10g0564300; OsI_06769; OsI_34676; OsJ_06275; OsJ

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L27e	IPR001141	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L27e, conserved site	IPR018262	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15000.1	Ribosomal L27e protein family chr4:8571896-8572303 FORWARD LENGTH=135	1.0e-21	63%
RefSeq	Arabidopsis thaliana	NP_001078392.1	60S ribosomal protein L27-3 [Arabidopsis thaliana]	1.0e-21	63%
RefSeq	Populus trichocarpa	XP_002323180.1	predicted protein [Populus trichocarpa]	3.0e-21	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABK8

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 68 - 135

Fln protein: PEEVADVKYVSKEQLKAFIKVVNYNHIMPTRYSLDVDLKNVVTFDKLETRDKKVAALKGVKASFEERF

Protein Length: 69

Fln nts: CCAGAAGAGGTTGCCGATGTTAAGTACGTAAGCAAAGAGCAGTTGAAGGCTTTCATCAAGGTTGTTAACTACAACCACATCATGCCCACCAGGTATAGTTTGGATGTGGATTTGAAGAATGTAGTTACTTTTGATAAACTGGAGACCCGCGATAAGAAGGTGGCGGCGCTAAAGGGAGTAAAAGCTTCCTTTGAGGAGAGGTTC

Fln Alignment:

GD4IA4403GNLLM___KYVSKEQLKAFIKVVNYNHIMPTRYSLDVDLKNVVTFDKLETRDKKVAALKGVKASFEERF
D5ABK8_______________KTAKKSRLKAFIKVVNYNHIMPTRYSLDVDLKNVVTFDKLETRDKKVAALKGVKASFEERF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain