SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77270

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene77270
AAGTGGCTTATAATTATTTCCCTTCTGCAGGCAAGGAGAGCATTGCGAGCCCTAAAGGGCTTGGTGAAACTGCAGGCCTTGGTTCGTGGGTACTTGGTGAGAAAGGAAGCGGACGCTACTCTGTGCTCCATGCAAGCCCTCATTAGAGCCCAGGCCCGAGTACGTGCCCATCGTCTTAAGATGAGCGAACAAGCTGCTGGG

Ace file of the UniGene sp_v3.0_unigene77270

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	IQ calmodulin-binding motif family protein, expressed	-	-	5.337e-20	-

Source	Gene names
Sma3	AT4g29150; At1g51960; At1g72670; At2g26180; At3g16490; At3g49260; At4g00820; At4g14750; At4g29150; At5g07240; F19B15.180; F28P22.14; F2K15.120; F5F19.1; GCA2; GSVIVT00000506001; GSVIVT00001125001; GSVIVT00007378001; GSVIVT00007477001; GSVIVT00008074001; G

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000097	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein L34e, conserved site	IPR018065	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16490.1	IQD26 IQ-domain 26 chr3:5603962-5605489 REVERSE LENGTH=389	5.0e-12	78%
RefSeq	Arabidopsis thaliana	NP_188270.1	protein IQ-domain 26 [Arabidopsis thaliana]	6.0e-12	78%
RefSeq	Populus trichocarpa	XP_002299741.1	predicted protein, partial [Populus trichocarpa]	6.0e-13	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS1

Fln msg: Distance to subject end: 465 aas, your sequence is shorter than subject: 67 - 672

Fln protein: KWLIIISLLQARRALRALKGLVKLQALVRGYLVRKEADATLCSMQALIRAQARVRAHRLKMSEQAAG

Protein Length: 68

Fln nts: AAGTGGCTTATAATTATTTCCCTTCTGCAGGCAAGGAGAGCATTGCGAGCCCTAAAGGGCTTGGTGAAACTGCAGGCCTTGGTTCGTGGGTACTTGGTGAGAAAGGAAGCGGACGCTACTCTGTGCTCCATGCAAGCCCTCATTAGAGCCCAGGCCCGAGTACGTGCCCATCGTCTTAAGATGAGCGAACAAGCTGCTGGG

Fln Alignment:

GD4IA4403F2EK2___KGLVKLQALVRGYLVRKEADATLCSMQALIRAQARVRAHRLKMSEQ
B8LKS1_______________RGLIRLQALVRGHMVRRQAAGSLRCLQAIIRLQALVRAHQVRMSEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain