SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77224

Length: 330 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene77224
TGGCATGCGTTGAGGGAACTCCGCGCAAACAACGTCGACGTCGTAACCTTTGGCCAATACATGCGGCCCACCAAGCGCCACATGGCCGTCCACGACTACGTCACACCCGACAAATTCGAACTCTGGCGCCAGCGCGCCCTCGACATGGGTTTCCTATACTGCGCCTCCGGCCCACTCGTACGCTCAAGTTACAAGGCCGGCGAGGCCTTTATCGAGAACGTATTGAAGAAGCGGAGGATGGGCAACGCAGGAAAGAGCGAAGTCGCAGATCTCAGTGTCGCAGAAGAGACTAGCAAGACGTTGTAAATATGTAGATATATGGAGATTCAT

Ace file of the UniGene sp_v3.0_unigene77224 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoyl synthase, mitochondrial n=2 Tax=Pyrenophora RepID=LIPA_PYRTR	-	-	0.0	90%
FL-Next	sp=Lipoyl synthase, mitochondrial; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Lipoic acid synthase	-	-	2.655e-12	-

Source	Gene names
Sma3	At2g20860; B1155G07.1; CHLREDRAFT_194766; H0523F07.4; LAS; LIP1; LIPA1; MICPUCDRAFT_20781; MICPUCDRAFT_4033; MICPUN_60627; MICPUN_86513; OJ1005_B11.11; OSJNBa0006M15.16; OSTLU_32294; Os04g0455800; Os05g0511500; OsI_16128; OsI_20590; OsJ_15022; OsJ_19166;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	lipoate synthase activity	GO:0016992	Molecular Function	-
Sma3		GO:0017140	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	glycine catabolic process	GO:0006546	Biological Process	-
Sma3	lipoate biosynthetic process	GO:0009107	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoate synthase	IPR003698	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20860.1	LIP1 lipoic acid synthase 1 chr2:8979636-8980983 FORWARD LENGTH=374	5.0e-26	55%
RefSeq	Arabidopsis thaliana	NP_179682.1	lipoic acid synthase 1 [Arabidopsis thaliana]	7.0e-26	55%
RefSeq	Populus trichocarpa	XP_002306361.1	predicted protein [Populus trichocarpa]	3.0e-25	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNH7

Fln msg: your sequence is shorter than subject: 102 - 386

Fln protein: WHALRELRANNVDVVTFGQYMRPTKRHMAVHDYVTPDKFELWRQRALDMGFLYCASGPLVRSSYKAGEAFIENVLKKRRMGNAGKSEVADLSVAEETSKTL*

Protein Length: 103

Fln nts: TGGCATGCGTTGAGGGAACTCCGCGCAAACAACGTCGACGTCGTAACCTTTGGCCAATACATGCGGCCCACCAAGCGCCACATGGCCGTCCACGACTACGTCACACCCGACAAATTCGAACTCTGGCGCCAGCGCGCCCTCGACATGGGTTTCCTATACTGCGCCTCCGGCCCACTCGTACGCTCAAGTTACAAGGCCGGCGAGGCCTTTATCGAGAACGTATTGAAGAAGCGGAGGATGGGCAACGCAGGAAAGAGCGAAGTCGCAGATCTCAGTGTCGCAGAAGAGACTAGCAAGACGTTGTAA___ATATGTAGATATATGGAGATTCAT

Fln Alignment:

GD4IA4402D8V1D___LRELRANNVDVVTFGQYMRPTKRHMAVHDYVTPDKFELWRQRALDMGFLYCASGPLVRSSYKAGEAFIENVLKKRR
A9NNH7_______________MEKVREAGVDVITFGQYMRPTKRHMAVSEYVTPEAFEKYQKLGMEMGFRYVASGPMVRSSYKAGEFYIKSMIEDDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain