SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77195

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene77195
GATGATCTAGATTCAAAACATGGATGTATCTTCTGCTCATCCACCTTCTATGAATTTTACTAGAAAAATTAAGGAAATGGATGCATGTTCGAGAGGGAACAAAGATCATAGTTCAAGTTATTAAAGAAGAACTTGGAACAAAAGGGCCACAACTAAGTGCATATCCTTCTCTTACTAGTAGATTCTGGGTACTCTTAACACAAAGT

Ace file of the UniGene sp_v3.0_unigene77195

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNAse E/G-like protein n=8 Tax=Arabidopsis RepID=F4IV66_ARATH	-	-	7.0e-12	73%
FL-Next	tr=RNAse E/G-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Sma3	Putative ribonuclease E	-	-	9.576e-10	-

Source	Gene names
Sma3	At2g04270; GSVIVT00029064001; POPTRDRAFT_247130; RCOM_1213430; rne;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	endoribonuclease activity	GO:0004521	Molecular Function	-
Sma3	ribonuclease activity	GO:0004540	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	chloroplast organization	GO:0009658	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate binding module family 20	IPR002044	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	Ribonuclease E/G	IPR004659	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04270.5	RNEE/G RNAse E/G-like chr2:1474961-1480014 FORWARD LENGTH=1001	3.0e-16	73%
RefSeq	Arabidopsis thaliana	NP_850989.1	RNAse E/G-like protein [Arabidopsis thaliana]	3.0e-16	73%
RefSeq	Populus trichocarpa	XP_002321206.1	predicted protein, partial [Populus trichocarpa]	8.0e-15	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4IV69

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 329 aas, your sequence is shorter than subject: 68 - 619

Fln protein: *SRFKTWMYLLLIHLL*ILLEKLRKWMHVREGTKIIVQVIKEELGTKGPQLSAYPSLTSRFWVLLTQS

Protein Length: 69

Fln nts: GATGATCTAGATTCAAAACATGGATGTATCTTCTGCTCATCCACCTTCTATGAATTTTACTAGAAAAATTAAGGAAATGGATGCATGTTCGAGAGGGAACAAAGATCATAGTTCAAGTTATTAAAGAAGAACTTGGAACAAAAGGGCCACAACTAAGTGCATATCCTTCTCTTACTAGTAGATTCTGGGTACTCTTAACACAAAGT

Fln Alignment:

GD4IA4402DHEUL___KLRKWMHVREGTKIIVQVIKEELGTKGPQLSAYPSLTSRFWVLLTQ
F4IV69_______________KDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain