SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77162

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene77162
GATGGTGTGAAACTTGATGATCAGAGAGTGATTGATGATATTTGTAAATATAAAGATGCTGCAATTCATTTGGTGGTTCAGGAATCAGCCAAAGTGAGTGCGAAACCAGTGGAGAAAGATTTAGAATTGTCTGTGATAGCACGCGATTTTAACGAGAATAGAGATAGAAAAGCTAGGGAGACAAAGGCTAGGGATTTCTGGTTGGAACCTGTAATTGTTAATCCTGAGAT

Ace file of the UniGene sp_v3.0_unigene77162

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana] ref\|NP_973700.1\| phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana] gb\|AAL31898.1\|AF419566_1 At2g46500/F11C10.19 [Arabidopsis thaliana] gb\|AAD20161.1\| expressed protein [Arabidopsis thaliana]	-	-	1.0e-11	47%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	49%

Source	Gene names
Sma3	GSVIVT00006737001; POPTRDRAFT_728809;

Source	GOs	Term	Type	e value	Identity
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	0.0	-
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	0.0	-
Sma3	Ubiquitin	IPR000626	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46500.1	ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 phosphoinositide 4-kinase gamma 4 chr2:19086741-19088534 REVERSE LENGTH=566	7.0e-16	47%
RefSeq	Arabidopsis thaliana	NP_001189762.1	phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana]	6.0e-16	47%
RefSeq	Populus trichocarpa	XP_002297971.1	predicted protein [Populus trichocarpa]	1.0e-21	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RCU2

Fln msg: Distance to subject end: 335 aas, your sequence is shorter than subject: 76 - 584

Fln protein: DGVKLDDQRVIDDICKYKDAAIHLVVQESAKVSAKPVEKDLELSVIARDFNENRDRKARETKARDFWLEPVIVNPE

Protein Length: 77

Fln nts: GATGGTGTGAAACTTGATGATCAGAGAGTGATTGATGATATTTGTAAATATAAAGATGCTGCAATTCATTTGGTGGTTCAGGAATCAGCCAAAGTGAGTGCGAAACCAGTGGAGAAAGATTTAGAATTGTCTGTGATAGCACGCGATTTTAACGAGAATAGAGATAGAAAAGCTAGGGAGACAAAGGCTAGGGATTTCTGGTTGGAACCTGTAATTGTTAATCCTGAGAT

Fln Alignment:

GD4IA4402EZOAQ___DGVKLDDQRVIDDICKYKDAAIHLVVQESAKVSAKPVEKDLELSVIARDFNENRD-------------RKARETKARDFWLEPVIVNPE
B9RCU2_______________NGEKLDDQRVIGDICSNNDAAIHLLVQKSAHVRAKPLEKDFEISIVAADSSDRRESAVEGGKNQSEELQVLKKQSGRDFWLKPVIINPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain