SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77084

Length: 159 nt

UniGene Fasta

>sp_v3.0_unigene77084
CAGAGGCTTCTTCTTATTTTAATGACGTCAAATCCGTTGCCACATCGTGGTGTTCATAAACCGGGATCCGTGGGCAAGGCGGTAGGGCAGGAATTAGCCATTCTGGATCACAACGGAGTTGTTCAGAAACNGGGATGTAGCGGTGAGGTCTGTATACGG

Ace file of the UniGene sp_v3.0_unigene77084

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate-CoA ligase-like protein [Coffea arabica]	-	-	2.0e-10	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	4-coumarate-CoA ligase-like protein	-	-	7.698e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	o-succinylbenzoate--CoA ligase.	EC:6.2.1.26	-	2.693e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	2.693e-07	%
Sma3	Metabolic pathways	01100	2.693e-07	%
Sma3	Biosynthesis of secondary metabolites	01110	2.693e-07	%

Source	Gene names
Sma3	4cl1; ACLL2; AMPBP3; At3g48990; GSVIVT00000396001; GSVIVT00009148001; H0306F12.7; OSJNBa0088H09.2; Os04g0683700; OsI_17978; OsJ_16676; PHYPADRAFT_117032; POPTRDRAFT_709378; POPTRDRAFT_835312; RCOM_1495910; RCOM_1686390; T2J13.170;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48990.1	AMP-dependent synthetase and ligase family protein chr3:18159031-18161294 REVERSE LENGTH=514	1.0e-14	65%
RefSeq	Arabidopsis thaliana	NP_190468.1	AMP-dependent synthetase and ligase-like protein [Arabidopsis thaliana]	1.0e-14	65%
RefSeq	Populus trichocarpa	XP_002298041.1	predicted protein [Populus trichocarpa]	9.0e-17	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL52

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 53 - 536

Fln protein: QRLLLILMTSNPLPHRGVHKPGSVGKAVGQELAILDHNGVVQKQGCSGEVCIR

Protein Length: 54

Fln nts: CAGAGGCTTCTTCTTATTTTAATGACGTCAAATCCGTTGCCACATCGTGGTGTTCATAAACCGGGATCCGTGGGCAAGGCGGTAGGGCAGGAATTAGCCATTCTGGATCACAACGGAGTTGTTCAGAAACaGGGATGTAGCGGTGAGGTCTGTATACGG

Fln Alignment:

GD4IA4402EOVVH___LMTSNPLPHRGVHKPGSVGKAVGQELAILDHNGVVQKQGCSGEVCIR
B8LL52_______________LMTSNPLPHRGVHKSGSVGKAVGQELAILDHSGVIQKPGCSGEVCIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain