SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77076

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene77076
TCGCCGAATGAGCCATGGCACAGCCCGAGAGCTCGTTCGGCGAAACAAAACAATGATGGAACGCCGGTCACGGTAGAGTCTCACCGATCTGTGCCGGCTCCGTTTCTCATTAAGACATATCAGCTGGTGGATGATTCGAACACGGATGATATAATTTCATGGAATGAAG

Ace file of the UniGene sp_v3.0_unigene77076

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock transcription factor (HSF) n=3 Tax=Glycine max RepID=Q00M68_SOYBN	-	-	4.0e-07	62%
FL-Next	sp=Heat stress transcription factor B-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%

Source	Gene names
Sma3	At4g36990; HSF16; HSF24; HSF4; HSFB1; NtHSF1; POPTRDRAFT_1083203; VITISV_028661;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36990.1	HSF4, HSFB1, AT-HSFB1, ATHSF4 heat shock factor 4 chr4:17440660-17441706 FORWARD LENGTH=284	8.0e-11	72%
RefSeq	Populus trichocarpa	XP_002327155.1	predicted protein [Populus trichocarpa]	3.0e-11	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q96320

Fln msg: Distance to subject end: 248 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 56 - 284

Fln protein: SPNEPWHSPRARSAKQNNDGTPVTVESHRSVPAPFLIKTYQLVDDSNTDDIISWNE

Protein Length: 57

Fln nts: TCGCCGA_-_ATGAGCCATGGCACAGCCCGAGAGCTCGTTCGGCGAAACAAAACAATGATGGAACGCCGGTCACGGTAGAGTCTCACCGATCTGTGCCGGCTCCGTTTCTCATTAAGACATATCAGCTGGTGGATGATTCGAACACGGATGATATAATTTCATGGAATGAAG

Fln Alignment:

GD4IA4402C96YG___TPVTVESHRSVPAPFLIKTYQLVDDSNTDDIISWNE
Q96320_______________TAVTA-AQRSVPAPFLSKTYQLVDDHSTDDVVSWNE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain